Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060582.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 146 2e-35
07_01_0756 + 5819367-5820038,5820847-5821005 142 3e-34
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 8e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.4
05_06_0155 - 26028923-26030263 29 3.4
04_03_0141 + 11767781-11767880,11767953-11769262 28 6.0
08_01_0180 - 1524302-1524877,1525998-1527056 28 7.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 146 bits (353), Expect = 2e-35
Identities = 80/130 (61%), Positives = 93/130 (71%), Gaps = 2/130 (1%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GL
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGL 122
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XL 592
GVKC+KEVATAIRGAIILAKLSV+PVRR Y G HT P V +
Sbjct: 123 GVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRM--VP 180
Query: 593 LPRGTGIVSA 622
PRG+GIV+A
Sbjct: 181 APRGSGIVAA 190
Score = 48.0 bits (109), Expect = 7e-06
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYL 251
+++++ WVPVTKLGRLV+EG+ K+E IYL
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYL 67
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 142 bits (343), Expect = 3e-34
Identities = 79/136 (58%), Positives = 94/136 (69%), Gaps = 2/136 (1%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRR Y G HT P V
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 179
Query: 575 QSG*XLLPRGTGIVSA 622
+ PRG+GIV+A
Sbjct: 180 RM--VPAPRGSGIVAA 193
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYL 251
+++++ WVPVTKLGRLV+E KI K+E IYL
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYL 70
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 308 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 487
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 488 LPV 496
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 380 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 475
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1
Query: 526 KPHTVPCKVTGKCGSXTVRLIXAPSWYWNCVCGQFPKKLLSRLAG 660
KPHTV CKV K GS TVR++ P + V + PKK+L + AG
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGS-SVVATRVPKKVL-KFAG 89
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 442 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 326
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>05_06_0155 - 26028923-26030263
Length = 446
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 185 SCHQTRPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLN 310
SCH P R N RE+L S+P + D F +L+
Sbjct: 52 SCHSNVPELIRAMNAPLREYLRSSVPSARAVVFDMFCACALD 93
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 192 TKLGRLVREGKIDKLESIYLFLYQSKNSRSLISSSARP 305
T++G L + ++ LES F+Y + S SSSARP
Sbjct: 428 TRVGTL--DSRVQMLESSQAFVYHGRRDASHPSSSARP 463
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 460 RYYPC*VVCFTSSKXLRGNXI--GKPHTVPCKVTGKCGSXTVRLIXAPSWYWNCVC 621
RY+P C+ + L G + GK ++V +V G G V + A YW +C
Sbjct: 293 RYHPRRRPCWVPVEDLGGRSVFVGKNNSVALRVDGGGGGGGVPGLRANCVYWTDIC 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,796
Number of Sequences: 37544
Number of extensions: 357958
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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