Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060582.seq
         (684 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   175   5e-44
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   175   5e-44
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   175   5e-44
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   175   5e-44
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   175   5e-44
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   5.9  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  175 bits (426), Expect = 5e-44
 Identities = 98/136 (72%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
 Frame = +2

Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
           K +   E  L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRR Y G      HT P         V  
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSV 176

Query: 575 QSG*XLLPRGTGIVSA 622
           +      PRGTGIVSA
Sbjct: 177 RL--IPAPRGTGIVSA 190



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 25/31 (80%), Positives = 26/31 (83%)
 Frame = +3

Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
           KED K WVPVTKLGRLVREGKI  LE IYL+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  175 bits (426), Expect = 5e-44
 Identities = 98/136 (72%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
 Frame = +2

Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
           K +   E  L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRR Y G      HT P         V  
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSV 176

Query: 575 QSG*XLLPRGTGIVSA 622
           +      PRGTGIVSA
Sbjct: 177 RL--IPAPRGTGIVSA 190



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 25/31 (80%), Positives = 26/31 (83%)
 Frame = +3

Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
           KED K WVPVTKLGRLVREGKI  LE IYL+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  175 bits (426), Expect = 5e-44
 Identities = 98/136 (72%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
 Frame = +2

Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
           K +   E  L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRR Y G      HT P         V  
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSV 176

Query: 575 QSG*XLLPRGTGIVSA 622
           +      PRGTGIVSA
Sbjct: 177 RL--IPAPRGTGIVSA 190



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 25/31 (80%), Positives = 26/31 (83%)
 Frame = +3

Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
           KED K WVPVTKLGRLVREGKI  LE IYL+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  175 bits (426), Expect = 5e-44
 Identities = 98/136 (72%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
 Frame = +2

Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
           K +   E  L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRR Y G      HT P         V  
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSV 176

Query: 575 QSG*XLLPRGTGIVSA 622
           +      PRGTGIVSA
Sbjct: 177 RL--IPAPRGTGIVSA 190



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 25/31 (80%), Positives = 26/31 (83%)
 Frame = +3

Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
           KED K WVPVTKLGRLVREGKI  LE IYL+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  175 bits (426), Expect = 5e-44
 Identities = 98/136 (72%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
 Frame = +2

Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
           K +   E  L SLPIKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRR Y G      HT P         V  
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSV 176

Query: 575 QSG*XLLPRGTGIVSA 622
           +      PRGTGIVSA
Sbjct: 177 RL--IPAPRGTGIVSA 190



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 25/31 (80%), Positives = 26/31 (83%)
 Frame = +3

Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
           KED K WVPVTKLGRLVREGKI  LE IYL+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLY 67


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 526  KPHTVPCKVTGKCGSXTV--RLIXAPSWYWNCVCGQFPKKLLSRLAGCTRNCLQP 684
            KP   PC+VTG C + T     +  P+   +  CG F    + +   C   CLQP
Sbjct: 2858 KPLPSPCQVTGDCPTNTYCSDSVCKPACVLDTECGAFE---VCQGGQCFNPCLQP 2909


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,134,920
Number of Sequences: 53049
Number of extensions: 594954
Number of successful extensions: 1567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)