Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060582.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   146   1e-35
Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   5.4  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   5.4  
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    27   9.4  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  146 bits (355), Expect = 1e-35
 Identities = 86/137 (62%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
 Frame = +2

Query: 218 RKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 397
           +K     E  L SLPIKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70  KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128

Query: 398 NNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVL 571
           + GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRR Y G      HT P       + V+
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVM 188

Query: 572 XQSG*XLLPRGTGIVSA 622
            +      PRGTGIVSA
Sbjct: 189 VRL--IPAPRGTGIVSA 203



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 165 EDQKXWVPVTKLGRLVREGKIDKLESIYL 251
           E +  W PVTKLGRLV+E KI  LE IYL
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYL 80


>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 195 KLGRLVREGKIDKLESIYLFLYQSKNSRSL 284
           K+G ++REGK++K  S    +Y+  NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 505 TSSNW*NRQLSKDNSASNGSG 443
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 319 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 462
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 319 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 462
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 263 LVKKQVNALEFVDFSFANKTAEFGDRN-PLFLVF 165
           L   +  ALEF++  F    A FGDRN P   VF
Sbjct: 245 LASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -2

Query: 557 PVTLQGTVCGXPXLLPRNXFELVKQTT*QG**RLEWQWRLPCCTSHPNQYDRC-CRQWQQ 381
           PV  Q + C    +  +  +  V+Q   Q     + Q + P C   P Q D C C+  QQ
Sbjct: 32  PVQQQPSCCQQSTINVQVQYTQVQQAPAQDPCACQPQQQQPACNCAPVQQDPCACQPQQQ 91

Query: 380 MP*NVCA 360
            P   CA
Sbjct: 92  QPACNCA 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,821
Number of Sequences: 27780
Number of extensions: 291853
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)