Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060582.seq
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 7e-40
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 2e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 158 4e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 158 4e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 158 4e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 158 4e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 29 3.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.0
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 6.6
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ... 27 8.8
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 8.8
At3g01450.1 68416.m00069 expressed protein 27 8.8
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 160 bits (389), Expect = 7e-40
Identities = 84/134 (62%), Positives = 98/134 (73%), Gaps = 2/134 (1%)
Frame = +2
Query: 227 RQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 406
+Q + L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 407 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQS 580
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRR Y G HT P V +
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 189
Query: 581 G*XLLPRGTGIVSA 622
PRG+GIV+A
Sbjct: 190 --VPAPRGSGIVAA 201
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
+++ WVPVTKLGRLV G I ++E IYL
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYL 77
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (386), Expect = 2e-39
Identities = 82/127 (64%), Positives = 96/127 (75%), Gaps = 2/127 (1%)
Frame = +2
Query: 248 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 427
L SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVK
Sbjct: 68 LHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVK 127
Query: 428 CSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XLLPR 601
CSKEVATAIRGAIILAKLSV+P+RR Y G HT P V + PR
Sbjct: 128 CSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPR 185
Query: 602 GTGIVSA 622
G+GIV+A
Sbjct: 186 GSGIVAA 192
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
+++ WVPVTKLGRLV+EGKI K+E IYL
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYL 68
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 83/127 (65%), Positives = 95/127 (74%), Gaps = 2/127 (1%)
Frame = +2
Query: 248 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 427
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 428 CSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XLLPR 601
CSKEVATAIRGAIILAKLSV+PVRR Y G HT P V + PR
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPR 193
Query: 602 GTGIVSA 622
G+GIV+A
Sbjct: 194 GSGIVAA 200
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
++ WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 83/127 (65%), Positives = 95/127 (74%), Gaps = 2/127 (1%)
Frame = +2
Query: 248 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 427
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 428 CSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XLLPR 601
CSKEVATAIRGAIILAKLSV+PVRR Y G HT P V + PR
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPR 193
Query: 602 GTGIVSA 622
G+GIV+A
Sbjct: 194 GSGIVAA 200
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
++ WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 83/127 (65%), Positives = 95/127 (74%), Gaps = 2/127 (1%)
Frame = +2
Query: 248 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 427
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 428 CSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XLLPR 601
CSKEVATAIRGAIILAKLSV+PVRR Y G HT P V + PR
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPR 193
Query: 602 GTGIVSA 622
G+GIV+A
Sbjct: 194 GSGIVAA 200
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
++ WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 83/127 (65%), Positives = 95/127 (74%), Gaps = 2/127 (1%)
Frame = +2
Query: 248 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 427
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 428 CSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XLLPR 601
CSKEVATAIRGAIILAKLSV+PVRR Y G HT P V + PR
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM--VPAPR 193
Query: 602 GTGIVSA 622
G+GIV+A
Sbjct: 194 GSGIVAA 200
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
++ WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 491 PV 496
V
Sbjct: 209 QV 210
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 357 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLIGKETSK 244
P R FC+G+ +S + PR+KS +S+ L K+ K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 377 AFVAIGDNNGHIGLGVKCSKE 439
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 462 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMIFRTSSFR 304
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 403 RSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKXLRGNXIGKPHTVPCKVTGKCG 567
+S ++ CE+ + H + +Y P V+ + + + N KP+ + C KCG
Sbjct: 89 KSLFYNCEICNFNVHMYCAKYPPPQVIDISETHHHKLNLYKKPNYIDC--GDKCG 141
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 10 LSEPIVQQWRTLLQP 54
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 462 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 340
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,635
Number of Sequences: 28952
Number of extensions: 273288
Number of successful extensions: 724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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