Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060580.seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           30   1.5  
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124...    28   5.9  

>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 VSQNTGTCPESSCACPETSCACPETSCA 221
           ++++  TCP + C CPE  C     S A
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCGFAAASAA 143


>01_01_0136 +
           1237623-1237820,1238313-1239001,1239978-1240308,
           1240614-1241351
          Length = 651

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 108 CSFCKLY*TCVSQNTGTCPESSCACPETSCACPETSCACP 227
           CS   +Y   V+ +   CP + C+CPE  C    +  A P
Sbjct: 456 CSSYVVY-AGVADHQRACPCAPCSCPEPGCRFRSSPAALP 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,669,483
Number of Sequences: 37544
Number of extensions: 90059
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)