Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060580.seq
         (669 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    27   0.53 
U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.            23   8.7  

>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 104 LPQP*ELQPVFWLLPVSFPRVWTRRTRIS 18
           L QP    P+FW LP SFP +    T ++
Sbjct: 17  LLQPLLAAPIFWFLPWSFPALSPTTTTLA 45


>U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.
          Length = 280

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +3

Query: 162 PESSCACPETSCACPETSCACPESSLC 242
           PE+SC C      CP+        S C
Sbjct: 235 PEASCWCNSNPTQCPDLKPGVFNRSAC 261


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,769
Number of Sequences: 2352
Number of extensions: 3278
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)