Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060579.seq
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q70IG6 Cluster: Nef protein; n=1; Simian immunodeficien...    34   3.8  
UniRef50_Q38M49 Cluster: Putative glycine-rich RNA binding prote...    34   3.8  
UniRef50_Q0IME3 Cluster: Os12g0574800 protein; n=7; Oryza sativa...    34   3.8  
UniRef50_A1C4W2 Cluster: WW domain protein; n=2; Trichocomaceae|...    33   5.1  
UniRef50_Q53RR0 Cluster: Mov34/MPN/PAD-1 family, putative; n=7; ...    33   6.7  
UniRef50_A2XCF6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q0JA80 Cluster: Os04g0612100 protein; n=1; Oryza sativa...    33   8.8  
UniRef50_Q9VGH5 Cluster: CG6946-PA, isoform A; n=3; Drosophila m...    33   8.8  
UniRef50_P51991 Cluster: Heterogeneous nuclear ribonucleoprotein...    33   8.8  

>UniRef50_Q70IG6 Cluster: Nef protein; n=1; Simian immunodeficiency
           virus|Rep: Nef protein - Simian immunodeficiency virus
           (isolate CPZ GAB1) (SIV-cpz) (Chimpanzeeimmunodeficiency
           virus)
          Length = 248

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 596 LAPQLQSDARPLRWWWRRVEQEQIRWRWPSGGGS 495
           LAP    + R  +W+WR + ++Q +W WPS  GS
Sbjct: 15  LAPS-NKEGRQRKWYWRLLPEQQEKW-WPSPDGS 46


>UniRef50_Q38M49 Cluster: Putative glycine-rich RNA binding
           protein-like; n=1; Solanum tuberosum|Rep: Putative
           glycine-rich RNA binding protein-like - Solanum
           tuberosum (Potato)
          Length = 176

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 527 IRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
           +RWR   GGG +  G  +G   + GGG G
Sbjct: 98  VRWRREGGGGGYGGGGGYGGGRREGGGGG 126


>UniRef50_Q0IME3 Cluster: Os12g0574800 protein; n=7; Oryza
           sativa|Rep: Os12g0574800 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 489

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 21/53 (39%), Positives = 22/53 (41%)
 Frame = -2

Query: 602 RLLAPQLQSDARPLRWWWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGS 444
           R LAP L     P     RR E+    WR   GGGS   G   G  S  G GS
Sbjct: 88  RALAPDLGGGTPPRPRGVRRNERSGWGWRRRGGGGSMSGGGGGGGGSGSGSGS 140


>UniRef50_A1C4W2 Cluster: WW domain protein; n=2;
           Trichocomaceae|Rep: WW domain protein - Aspergillus
           clavatus
          Length = 249

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 575 DARPLRWWWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSGYKRFD 426
           D R  RW++   +  + RW  P GGG    G ++G+ S  G   GY++++
Sbjct: 62  DDRDRRWFYVNEQTGERRWERPYGGGG--AGGSYGQQSY-GQDGGYRQYE 108


>UniRef50_Q53RR0 Cluster: Mov34/MPN/PAD-1 family, putative; n=7;
           Oryza sativa|Rep: Mov34/MPN/PAD-1 family, putative -
           Oryza sativa subsp. japonica (Rice)
          Length = 1242

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 557 WWWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
           WWWR   Q +        GGS   G + G S   GGG G
Sbjct: 271 WWWRATAQRRFAEAVARVGGSGDGGHDCGGSGDVGGGDG 309


>UniRef50_A2XCF6 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 183

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 581 QSDARPLRWWWRRVEQEQIRWRWPSGGGSFKR--GSNFGKSSQRGGGSGYKR 432
           +  AR  R W     + +  W W  GGG   R  G   G + + GGG G +R
Sbjct: 77  EGGARSRRRWGMGAGRRRRGWAWRGGGGEGAREGGGGEGMAREGGGGGGARR 128


>UniRef50_Q0JA80 Cluster: Os04g0612100 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os04g0612100 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 329

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 587 QLQSDARPLRW-WWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
           Q +   R  RW  W    +   RW W  GGGS   G   G SS  GG +G
Sbjct: 154 QRRRGRRRCRWRQWSEAVRWWCRW-WAGGGGSGGEGGGGGGSSGGGGSNG 202


>UniRef50_Q9VGH5 Cluster: CG6946-PA, isoform A; n=3; Drosophila
           melanogaster|Rep: CG6946-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 586

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGY 438
           GGG F  GSNFG  +  GGG  +
Sbjct: 445 GGGGFNNGSNFGGGNSMGGGGNF 467


>UniRef50_P51991 Cluster: Heterogeneous nuclear ribonucleoprotein
           A3; n=98; Coelomata|Rep: Heterogeneous nuclear
           ribonucleoprotein A3 - Homo sapiens (Human)
          Length = 378

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKR 432
           GGG+F RG NFG     GGG G  R
Sbjct: 233 GGGNFGRGGNFGGRGGYGGGGGGSR 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,749,614
Number of Sequences: 1657284
Number of extensions: 10524710
Number of successful extensions: 26709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26532
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)