Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060579.seq
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 34 0.094
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 31 0.87
04_03_0918 - 20806627-20806724,20807674-20807962 31 1.2
02_02_0130 + 7062063-7063370 31 1.2
01_01_0152 + 1349820-1350107 31 1.2
12_02_0442 - 19118536-19119222 30 1.5
08_02_1000 + 23433447-23433946,23434078-23434279 30 1.5
05_07_0125 + 27861368-27862282 30 1.5
01_01_1008 - 7987936-7988628,7988923-7989102 30 1.5
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 30 2.0
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 30 2.0
11_01_0498 - 3828516-3829058 29 2.7
02_05_0192 + 26602247-26602617,26602701-26603016 29 3.5
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 3.5
07_01_0777 + 6004370-6004559,6005089-6005207,6005411-6005538,600... 29 4.7
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 29 4.7
01_06_0754 + 31721356-31721783,31721914-31722004,31722276-317223... 29 4.7
11_06_0070 + 19802893-19803026,19803054-19803816 28 6.2
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 28 6.2
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 28 6.2
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 28 6.2
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 6.2
01_02_0075 + 10873789-10873871,10873883-10874420 28 6.2
07_01_0534 - 3949551-3950350,3950997-3951006 28 8.1
02_04_0395 + 22590097-22590343,22590566-22590921 28 8.1
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -2
Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKRF 429
GGGS+ R +FG SS RGGG G F
Sbjct: 494 GGGSYGRRGSFGSSSSRGGGFGDSGF 519
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 650 PVKAQRXGTCSYRA*SRLLAPQLQSDARP--LRWWWRR 543
P ++ R GT + R S++L+ L+ A P LR WWRR
Sbjct: 340 PSQSVRIGTTNSRNLSQMLSQNLRPTAEPNPLRRWWRR 377
>04_03_0918 - 20806627-20806724,20807674-20807962
Length = 128
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 512 PSGGGSFK-RGSNFGKSSQRGGGSG 441
PSGGG ++ RGS +G S GGG G
Sbjct: 72 PSGGGGWRHRGSGWGWSPSSGGGGG 96
>02_02_0130 + 7062063-7063370
Length = 435
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 566 PLRWWWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
P RWW ++ +Q+Q + R + + ++FG SS+R G G
Sbjct: 231 PTRWWPKKKQQQQQQQR-----AAVNKSNSFGSSSRRRGARG 267
>01_01_0152 + 1349820-1350107
Length = 95
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 551 WRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
WR RWR +G G+ + G + Q GGG G
Sbjct: 41 WRAEAAAAARWRAEAGHGAMEGGGGCSDAVQAGGGGG 77
>12_02_0442 - 19118536-19119222
Length = 228
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 560 RWWWRRVEQEQIRWRWPSGGGSFKRG 483
+W WRR +EQ RWR G G +RG
Sbjct: 199 QWRWRRGSEEQRRWRMRRGTGE-RRG 223
>08_02_1000 + 23433447-23433946,23434078-23434279
Length = 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 587 QLQSDARPLRWWWRRVEQEQIRWR 516
QL + A RWWWR++ + RWR
Sbjct: 128 QLATAAVVWRWWWRQLASGKWRWR 151
>05_07_0125 + 27861368-27862282
Length = 304
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKRFDD 423
GG S++ G G+ RGGGS Y R+DD
Sbjct: 241 GGDSYRGGGGGGR---RGGGSRYDRYDD 265
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 554 WWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGS 444
WWRR + ++R R GGG G +S +R G+
Sbjct: 231 WWRRRGEARVRRRGRRGGGGEVNGEEAARSRRRRRGA 267
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 380 GFTLLEMPTKILFNSRQIVCNHCRPPFGYSCQ--NCFRV*KSRHHSATSTES 529
GFT K + Q C+ CR PFG++ + NC+ HS +S ++
Sbjct: 620 GFTAAICQHKSVSGMEQSQCSSCRQPFGFTRKRHNCYNCGLVHCHSCSSKKA 671
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 545 RVEQEQIRWRWPSGGG-SFKRGSNFGKSSQRGGGSGYKRFDD 423
R E+ Q+ RW GG S R S G + GGG G D
Sbjct: 24 RPERRQLELRWADGGSQSSARRSGVGLTGGGGGGGGGSEMKD 65
>11_01_0498 - 3828516-3829058
Length = 180
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -2
Query: 578 SDARPLRWWWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGG 447
S A P WWWRR RW W G + R S G G G
Sbjct: 70 SMAPPRWWWWRR------RWWWRDDGCAGARRSGAGGRGSGGVG 107
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 557 WWWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSGYK 435
WWWR Q + GGS G + G GG G +
Sbjct: 84 WWWRATAQRRFAEAVVRVGGSGDGGRDCGGGGNVGGAEGVR 124
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 548 RRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSGYKR 432
RR E + P+GGG G + KS GGG GY R
Sbjct: 185 RRTECNKCGAPSPAGGGGGGGGGGYNKSG--GGGGGYNR 221
>07_01_0777 +
6004370-6004559,6005089-6005207,6005411-6005538,
6005645-6005749,6007156-6008650
Length = 678
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 146 FYMNLTTFILLGKFQSKNALLQILGRITIKKY-HSFNKYK*CYL*NVWSLVDITINK 313
F MN FIL F+ ++ L I G I+KY H+ N+YK Y+ W+ V ++K
Sbjct: 540 FLMNNEHFILQ-HFEREDIKLMI-GTEWIQKYCHNINRYKVKYIEATWATVVSCLDK 594
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 554 WWRRVEQEQIRWRW--PSGGGSFKRGSNFGKSSQRGGGSG 441
WWRR +EQ R +W GG S SN G SG
Sbjct: 74 WWRRAAEEQWREQWGGADGGASTPAISNCRPEQSIRGVSG 113
>01_06_0754 +
31721356-31721783,31721914-31722004,31722276-31722365,
31722952-31723078,31723237-31723280,31723749-31724009
Length = 346
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 545 RVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGG 447
R++ +Q+ +P GGS GS+ G S GGG
Sbjct: 71 RLDDDQLMSMFPDEGGSSAPGSDNGGSDSDGGG 103
>11_06_0070 + 19802893-19803026,19803054-19803816
Length = 298
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 560 RWWWRRV---EQEQIRWRWPSGG---GSFKRGSNFGKSSQRGGGSG 441
RWW RR + ++ WRW SGG G + ++ G ++R G G
Sbjct: 143 RWWRRRPALRQGDRGGWRWYSGGNATGRRRERASGGHRAKRRAGRG 188
>10_08_0343 -
16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 506 GGGSFKRGSNFGKSSQRGGGSG 441
GGG +RG G +SQRG G G
Sbjct: 850 GGGGGRRGGGGGPNSQRGRGRG 871
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 518 RWPSGGGSFKRGSNFGKSSQRGGGSG 441
RW SGGG GS + S+ GGG G
Sbjct: 33 RWSSGGGGGGSGSPPHRFSRGGGGGG 58
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 509 SGGGSFKRGSNFGKSSQRGG-GSGYKRFD 426
SG GSF R +FGK RG G G K D
Sbjct: 726 SGQGSFGRKDSFGKEEPRGSQGDGTKTSD 754
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 515 WPSGGGSFKRGSNFGKSSQRGGG 447
+P GGG + G+N G+ QRGGG
Sbjct: 19 YPRGGGG-QGGTNRGRDGQRGGG 40
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 518 RWPSGGGSFKRGSNFGKSSQRGGGSGYKR 432
RW GGG +R G R GG G +R
Sbjct: 71 RWGGGGGGDRRWRGAGSDGWRCGGGGSRR 99
>07_01_0534 - 3949551-3950350,3950997-3951006
Length = 269
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 554 WWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
WWR Q++ GGS G + G GGG G
Sbjct: 201 WWRATAQQRFAEAVVGVGGSGDGGCDSGGGGDVGGGEG 238
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 554 WWRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
WWR Q++ GGS G + G GGG G
Sbjct: 132 WWRATAQQRFAEAVVGVGGSGDGGCDSGGGGDVGGGEG 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,384
Number of Sequences: 37544
Number of extensions: 303571
Number of successful extensions: 1516
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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