Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060579.seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)                 29   4.8  
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_14449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  28   6.3  

>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 437  CNHCRPPFGYSCQNCFRV*KSRHH 508
            C  C P F Y C+NCFRV +S  H
Sbjct: 1199 CKTC-PDFDY-CENCFRVRRSHRH 1220


>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
          Length = 258

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 506 GGGSFKRGSNF-GKSSQRGGGSGYK 435
           GGG ++ G  + G    RGGG GY+
Sbjct: 138 GGGGYRSGGGYRGGGGYRGGGGGYR 162


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -2

Query: 509 SGGGSFKRGSNFGKSSQRGGGSG 441
           S GGSF  GS FG  S  GGG G
Sbjct: 441 SSGGSFG-GSGFGSKSSGGGGGG 462


>SB_14449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 551 WRRVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGG-GSGYKR 432
           +   E+   +WR   G GS +RG   G   +R G GSG +R
Sbjct: 93  YEHFERINTKWRERPGIGSEERGPGIGSEERRPGIGSGERR 133


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSS----QRGGGSGYK 435
           GGGS  RG   G+SS     R GGS YK
Sbjct: 476 GGGSSSRGGGGGRSSSGGNSRSGGSSYK 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,376
Number of Sequences: 59808
Number of extensions: 333596
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)