Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060579.seq
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113470-1|AAI13471.1|  378|Homo sapiens LOC653115 protein protein.    33   1.3  
BC112027-1|AAI12028.1|  378|Homo sapiens heterogeneous nuclear r...    33   1.3  
BC080591-1|AAH80591.1|  189|Homo sapiens HNRPA3 protein protein.       33   1.3  
AY363225-1|AAQ63629.1|  378|Homo sapiens heterogeneous nuclear r...    33   1.3  
AC079305-1|AAY14709.1|  378|Homo sapiens unknown protein.              33   1.3  
S63912-1|AAB27595.1|  269|Homo sapiens FBRNP protein.                  31   5.2  
M99061-1|AAC83410.1|  645|Homo sapiens epidermal cytokeratin 2 p...    30   9.1  
AF019084-1|AAB81946.1|  645|Homo sapiens keratin 2e protein.           30   9.1  

>BC113470-1|AAI13471.1|  378|Homo sapiens LOC653115 protein protein.
          Length = 378

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKR 432
           GGG+F RG NFG     GGG G  R
Sbjct: 233 GGGNFGRGGNFGGRGGYGGGGGGSR 257


>BC112027-1|AAI12028.1|  378|Homo sapiens heterogeneous nuclear
           ribonucleoprotein A3 protein.
          Length = 378

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKR 432
           GGG+F RG NFG     GGG G  R
Sbjct: 233 GGGNFGRGGNFGGRGGYGGGGGGSR 257


>BC080591-1|AAH80591.1|  189|Homo sapiens HNRPA3 protein protein.
          Length = 189

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKR 432
           GGG+F RG NFG     GGG G  R
Sbjct: 44  GGGNFGRGGNFGGREGYGGGGGGSR 68


>AY363225-1|AAQ63629.1|  378|Homo sapiens heterogeneous nuclear
           ribonucleoprotein A3 protein.
          Length = 378

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKR 432
           GGG+F RG NFG     GGG G  R
Sbjct: 233 GGGNFGRGGNFGGRGGYGGGGGGSR 257


>AC079305-1|AAY14709.1|  378|Homo sapiens unknown protein.
          Length = 378

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKR 432
           GGG+F RG NFG     GGG G  R
Sbjct: 233 GGGNFGRGGNFGGRGGYGGGGGGSR 257


>S63912-1|AAB27595.1|  269|Homo sapiens FBRNP protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 524 RWRWPSGGGSFKRGSNFGKSSQRGGGSGYKR 432
           R  +  GGG+F R  NFG     GGG G  R
Sbjct: 227 RGNFGGGGGNFGRDGNFGGRGGYGGGGGGSR 257


>M99061-1|AAC83410.1|  645|Homo sapiens epidermal cytokeratin 2
           protein.
          Length = 645

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 503 GGSFKRGSNFGKSSQRGGGSGY 438
           GG F  GS FG  S  GGGSG+
Sbjct: 93  GGGFGGGSGFGGGSGFGGGSGF 114


>AF019084-1|AAB81946.1|  645|Homo sapiens keratin 2e protein.
          Length = 645

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 503 GGSFKRGSNFGKSSQRGGGSGY 438
           GG F  GS FG  S  GGGSG+
Sbjct: 93  GGGFGGGSGFGGGSGFGGGSGF 114


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,959,167
Number of Sequences: 237096
Number of extensions: 1636536
Number of successful extensions: 3426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3405
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)