Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060579.seq
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 31 0.60
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 28 5.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 28 5.5
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 28 5.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 28 5.5
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 28 7.3
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 28 7.3
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 28 7.3
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 28 7.3
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 27 9.7
U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical p... 27 9.7
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 27 9.7
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 27 9.7
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 545 RVEQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSG 441
+V + Q R R GGG RG NFG RG G+G
Sbjct: 84 KVNRAQQRDRSDRGGGRGGRGGNFGDRGGRGRGAG 118
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKRFDDY 420
GGGS G N+G + GGG+ + Y
Sbjct: 96 GGGSGNGGGNYGSGASTGGGANTAGYGGY 124
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKRFDDY 420
GGGS G N+G + GGG+ + Y
Sbjct: 96 GGGSGNGGGNYGSGASTGGGANTAGYGGY 124
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 506 GGGSFKRGSNFGKSSQRGGGSGYKRFDDY 420
GGGS G N+G + GGG+ + Y
Sbjct: 96 GGGSGNGGGNYGSGASTGGGANTAGYGGY 124
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 518 RWPSGGGSFKRGSNFGKSSQRGGGSG 441
RW GGG G+N G RGGG G
Sbjct: 39 RWGGGGGPGGWGNNGGGGWGRGGGRG 64
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 521 WRWPSGGGSFKRGSNFGKSSQRGGGSG 441
W+ SGGG K G GK + G GSG
Sbjct: 1107 WKRSSGGGR-KNGYQSGKKTSAGAGSG 1132
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 521 WRWPSGGGSFKRGSNFGKSSQRGGGSG 441
W+ SGGG K G GK + G GSG
Sbjct: 1107 WKRSSGGGR-KNGYQSGKKTSAGAGSG 1132
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 503 GGSFKRGSNFGKSSQ--RGGGSGYKRFDDY 420
GGS +RG+ FG++ + G GSG+ DDY
Sbjct: 1684 GGSNERGAGFGEAVRLTDGVGSGHLNDDDY 1713
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 503 GGSFKRGSNFGKSSQ--RGGGSGYKRFDDY 420
GGS +RG+ FG++ + G GSG+ DDY
Sbjct: 1681 GGSNERGAGFGEAVRLTDGVGSGHLNDDDY 1710
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 512 PSGGGSFKRGSNFGKSSQRGGGSGY 438
P GGGS+ G + GGG+GY
Sbjct: 118 PIGGGSYAGAGPIGGGAPIGGGAGY 142
>U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical
protein F20A1.9 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 515 WPSGGGSFKRGSNFGKSSQRGGG--SGYKRFDDY*IRFLL 402
W + GGS G G G S +K+FDDY + F L
Sbjct: 68 WATLGGSLNIGKGLDSFGYGGTGMKSTHKKFDDYGLPFTL 107
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 503 GGSFKRGSNFGKSSQRGGGSG 441
GG KRG++ G+ S GGG G
Sbjct: 522 GGGGKRGTSGGRKSDGGGGGG 542
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 503 GGSFKRGSNFGKSSQRGGGSG 441
GG KRG++ G+ S GGG G
Sbjct: 882 GGGGKRGTSGGRKSDGGGGGG 902
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,706
Number of Sequences: 27780
Number of extensions: 257768
Number of successful extensions: 801
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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