Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060579.seq
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04290.1 68418.m00422 KOW domain-containing transcription fac...    30   1.3  
At1g13020.1 68414.m01510 eukaryotic translation initiation facto...    29   2.2  
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains...    27   9.0  
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    27   9.0  
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    27   9.0  
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    27   9.0  
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    27   9.0  

>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
            family protein
          Length = 1493

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = -2

Query: 521  WRWPSGGGSFKR------GSNFGKSSQRGGGSGYKRFDD 423
            W  PSGG S+ +      GS++GK +  GGGS + + D+
Sbjct: 1123 WSKPSGGSSWGKQDGDGGGSSWGKENDAGGGSSWGKQDN 1161


>At1g13020.1 68414.m01510 eukaryotic translation initiation factor,
           putative (EIF4B5) eukaryotic initiation factor 4B
           (GI:6739522) {Arabidopsis thaliana}; EST gb|T22808 comes
           from this gene
          Length = 549

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 518 RWPSGGGSFKRGSNFGKSSQRGGGSG 441
           R+  GGGSF  G   G  S  GGG+G
Sbjct: 184 RYGGGGGSFGGGGGGGAGSYGGGGAG 209


>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 341

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 539 EQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSGYKRFDD 423
           E  Q+ WR+ + GG  K+G   G   + GGG      DD
Sbjct: 119 EDVQLVWRFVTDGGD-KKGGGGGVGGRGGGGGRRGGMDD 156


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 539 EQEQIRWRWPSGGGSFKRGSNFGKSSQRGGGSGYKRFDD 423
           E  Q+ WR+ + GG  K+G   G   + GGG      DD
Sbjct: 119 EDVQLVWRFVTDGGD-KKGGGGGVGGRGGGGGRRGGMDD 156


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 521 WRWPSGGGSFKRGSNFGKSSQRGGGSGY 438
           W W SG      GS  G S    GGS +
Sbjct: 43  WGWRSGNSGGSSGSGSGGSDSNSGGSSW 70


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 524 RWRWPSGGGSFKRGSNFGKSSQRGGGSGY 438
           R  +  GGG +  G  +G     GGG GY
Sbjct: 584 RGGYGGGGGGYGGGGGYGGGGGYGGGGGY 612


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 509 SGGGSFKRGSN-FGKSSQRGGGSGYKRF 429
           SGGG F RG+  FG    RG   G  RF
Sbjct: 486 SGGGGFGRGNGRFGSGGGRGRDGGRGRF 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,561
Number of Sequences: 28952
Number of extensions: 234822
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)