Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.1  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   6.7  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   6.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 376 SGRGTTCPRGFHFLGC 329
           +G   TCP GF+   C
Sbjct: 358 AGHKCTCPEGFYGKNC 373


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 VTRRPLGQKLLQKNPKNRMFTTQSGV 215
           ++R PLG KLL K+ + R+     GV
Sbjct: 81  LSRVPLGGKLLYKDFQLRLCAALYGV 106


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 VTRRPLGQKLLQKNPKNRMFTTQSGV 215
           ++R PLG KLL K+ + R+     GV
Sbjct: 81  LSRVPLGGKLLYKDFQLRLCAALYGV 106


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 482 SYISGSWNEIXLXSKRXLRE 423
           SY+ G  NEI L  ++  +E
Sbjct: 251 SYVDGGRNEIILLCEKVAKE 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,396
Number of Sequences: 336
Number of extensions: 2243
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)