Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   4.0  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   4.0  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   7.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.2  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    25   9.2  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    25   9.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.2  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = +2

Query: 140  DQETTGSKVITEKPEKPYVHYTKWRAPPDFDR*RAFFLGSXKALSAIHLRPEFRIFPVQI 319
            D   +G   + E+P +P +++ K+    D+D              A  L+ + R +  ++
Sbjct: 959  DVSNSGDITMGEEPSEPVINFEKFGVEVDYDELDEELRNDGSESMASVLQEKLREYSEEL 1018

Query: 320  DXAAP 334
            D  +P
Sbjct: 1019 DQMSP 1023


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 343 HFLGCSXVNLYRKNPKLGSKVYG 275
           HF+GCS +  Y    KLG   +G
Sbjct: 26  HFVGCSHLTDYHLMEKLGEGTFG 48


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 193 CSLHKVACASRFRSMTCIFSRQFXSPKCHTPSTRVSDFSGTN*QXCTLKS 342
           C   ++A  +R   + C  + +    KC T ST   D S  +   C++ S
Sbjct: 43  CEKCRIARITRHLHVKCTCNSRKKGSKCSTSSTTDLDSSSASNSSCSIPS 92


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 89   NFHYNLCTFHYFSDFLNAERPIIVALGL 6
            N+H++LC    F +  NA++ I+V + +
Sbjct: 1710 NYHWHLCRGLSFKEDANAKKWIVVCIDI 1737


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 94  DTTFTII-CALFTIFLIF*TRSGLLSWRLG 8
           D T TI+   LFT+++I    SG L W LG
Sbjct: 87  DPTMTIMGLDLFTLYVIGTIASGGLGWLLG 116


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 177 FSVITFDPVVSWSRGFHD 124
           F ++T+ P+VS ++ FH+
Sbjct: 271 FPLVTYSPIVSAAKAFHE 288


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 PKCHTPSTRVSDFSGT 315
           PKCH P+TR +D   T
Sbjct: 490 PKCHGPATRETDTMDT 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,225
Number of Sequences: 5004
Number of extensions: 38017
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)