Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421...    30   1.0  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    29   3.1  
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355...    28   4.0  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    28   4.0  
05_07_0082 + 27575924-27576917,27577371-27577732                       27   9.3  
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027...    27   9.3  

>09_04_0142 +
           15039745-15040538,15041094-15041218,15041842-15042137,
           15042267-15042554,15042834-15043193
          Length = 620

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 108 GDEERSRENRVTRRPLGQKLLQKNPKNRMFTTQS 209
           G++ER RE+ + RR  G++  Q+ P+ RM+  +S
Sbjct: 223 GEDERGREDVMVRRLAGRERWQRCPQCRMYVEKS 256


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 18  HDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKN 179
           H + P R Q+     K+  ++++ V KE EG+  R       R+P   K+++ N
Sbjct: 369 HSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNCRQP-NPKIVEDN 421


>06_01_0497 +
           3555919-3557154,3557815-3558143,3558177-3558775,
           3558919-3560393
          Length = 1212

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 148 DHWVKSYYRKTRKTVCSLHKVACASRFRSMTCIFSRQFXSP 270
           DH + S+ R  R T+   H V  A R+R    ++S +   P
Sbjct: 466 DHTIPSWLRSRRLTLFHDHPVLGAGRYRPFAALWSMRMSPP 506


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
 Frame = +3

Query: 30  PLRVQKIRKIVKSAQIIVKVVSKEAEGDE-----ERSRENRVTRRPLGQKLLQKNPKN-- 188
           PL V++     +S  ++  +VS+E   +E       + + R  ++P GQ +  K  K   
Sbjct: 675 PLEVRRALSKKRSNSLLNHLVSEECSDEEFVHDFPDAEQARDCQKPSGQNIGSKRKKGHR 734

Query: 189 -------RMFTTQSGVRLPISIDDVHF 248
                  +++T   GVRLP+S+++  F
Sbjct: 735 RGPTLCVKVWTLPEGVRLPVSLNNSGF 761


>05_07_0082 + 27575924-27576917,27577371-27577732
          Length = 451

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 146 ETTGSKVITEKPEKPYVHYTKWRA 217
           E + SK +++ PE P+VHY +  A
Sbjct: 38  EESSSKGVSQTPEAPFVHYYQTNA 61


>02_05_1324 -
           35702184-35702267,35702405-35702476,35702675-35702740,
           35702826-35702857,35702941-35703100,35703254-35703389,
           35703453-35703598,35703827-35704072,35704152-35704259,
           35704436-35704557,35704730-35704820,35704903-35705133,
           35705212-35705355,35705875-35705951,35706158-35706281,
           35706368-35706535,35706625-35706948
          Length = 776

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 39  VQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKNPKNRMFTTQSGVR 218
           + + RK +  AQI   V+S  A  DE+R + N++ +    +KL QK  +N +  T+   +
Sbjct: 196 LSEARKRIVEAQIKEAVLSGVALEDEQREKFNQIEQEL--EKLTQKFSENVLDATKKFEK 253

Query: 219 L 221
           L
Sbjct: 254 L 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,967
Number of Sequences: 37544
Number of extensions: 263416
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)