Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)             28   5.5  
SB_59806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_38905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              27   9.6  

>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 171 VITFDPVVSWSRGFHDYVPRH 109
           ++T  P VSW RGFH++ P H
Sbjct: 419 MVTSKPPVSWVRGFHNFNPGH 439


>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 291 PSFGFFRYKLTXLHPKKWKP-RGHVVPLPLG 380
           P FGF     T LHP ++ P  G  VPL  G
Sbjct: 888 PLFGFRTISRTGLHPNRYLPENGRWVPLSFG 918


>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 54  KIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKNPKNR 191
           K+V     I  ++ K  E +E+   E    +RP+G+KL  K P+NR
Sbjct: 540 KVVVRGPRISNLIDKMKEDEEDGYAELEEVQRPVGRKL--KYPQNR 583


>SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 114 EERSRENRVTRRPLGQKLLQKNPKNRMFTTQSGVRLP 224
           +E+     V ++ LG++L+ +NP+      ++ +RLP
Sbjct: 255 KEKKEREAVLKKALGKELILQNPEGEALAMKADLRLP 291


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 142 PGDHWVKSYYRKTRKTVCSLHKVACASRFRSMT-CIFSRQFXSPKCHTPSTRVSDFSGTN 318
           PG+ W+K    K RK+VC+LH +  A     +  C+ S    +    + +T  S  + TN
Sbjct: 236 PGNGWLKMC--KMRKSVCTLHLIGAAKCMPKVAHCLSSDNTTNNNLTSNNTSPSGGNTTN 293


>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
          Length = 722

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 3   REPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKNP 182
           ++ KR  ++ L+  K+    +  +I++KV  +  E  EE  R++  T     +K L  NP
Sbjct: 6   KDAKRSPSKTLKKAKVPPAGRK-RILLKVGGRVFETWEENLRKHPSTLLGSKEKELYYNP 64

Query: 183 KNRMFT 200
           + +M+T
Sbjct: 65  ETKMYT 70


>SB_59806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 270 RAXKLPRKNARHRSKSGGARHFV**TYGFSGFSVITFDP 154
           +A + P +NARHR      R  +    G+S  S+I F P
Sbjct: 144 KAIQTPLENARHRLAKHHTRRAISSLSGWSSPSIINFSP 182


>SB_38905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 163 SYYRKTRKTVCSLHKVACASRFRSMTCIFSRQFXSP 270
           S+Y  TR TV +L  + C SR+R     F+ +   P
Sbjct: 33  SFYSATRATVATLFVLQCDSRYRGHLVRFTVRLALP 68


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 158 ITKWTRPPYEHITKWTRPP 176


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 137 ITKWTRPPYEHITKWTRPP 155



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 214 ITKWTRPPYEHITKWTRPP 232



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 595 ITKWTRPPYEHITKWTRPP 613



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 606 ITKWTRPPYEHITKWTRPP 624



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 870 ITKWTRPPYEHITKWTRPP 888



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 167 ITEKPEKPYVHYTKWRAPP 223
           IT+    PY H TKW  PP
Sbjct: 881 ITKWTRPPYEHITKWTRPP 899


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,298
Number of Sequences: 59808
Number of extensions: 303928
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)