Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   2.7  
U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical...    27   6.3  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical
           protein M02D8.2 protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 42  QKIRKIVKSAQIIVKVVSKEAEGDEERSRENRV 140
           +K+RK +K  +  +++  K+ + +E+  R NRV
Sbjct: 91  KKLRKTIKKRECKIRIFKKKRDDNEDEHRRNRV 123


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 114 EERSRENRVTRRPLGQKLLQKNP-KNRMFTTQSGVRLPI 227
           EER  +NRV  + L +KL +K P K +  T Q+ V   I
Sbjct: 385 EERINQNRVLAKKLREKLEKKRPIKKKSLTHQNSVTAEI 423


>U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical
           protein ZK742.2 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 36  RVQKIRKIVKSAQIIVKVVSKEAEG--DEERSRENRVTRRPLGQKLLQKNPKN-RMFTTQ 206
           RVQ +RK+VK  Q++ +   K A+   D     +N V +    + +  + PKN R  +  
Sbjct: 290 RVQTLRKLVKRLQLLKQPGEKLAQEIIDYRDGIKNLVLKADELRIINPRPPKNKRKKSDD 349

Query: 207 SGVRLPISIDDV 242
             + + ISIDD+
Sbjct: 350 DFIDVDISIDDI 361


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 362 HVSTRFPLFRV-QXCQFVPEKSETRVEGVWHLGLXNCLEKMHVIDRNREAHATLCS 198
           H+S  F  F+V + C  + E     V+   HL     +EKM  ID    +HA +C+
Sbjct: 159 HLSEFF--FKVLERCHEIRENCRNMVQEQGHLAAFEVMEKMQKID--ERSHAIICN 210


>Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical
           protein Y48E1C.2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 315 KLTXLHPKKWKPRGHVVPLPLGIGQRRLAPEIAQEAFS 428
           +LT L+P +  PR +V  L  G G  RLA ++ ++ F+
Sbjct: 141 QLTELYPPETHPRHNVRILVPGCGLGRLAYDLMEQGFT 178


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 143  QETTGSKVITEKPEKPYVHYTKWRAPPDFDR*RAF--FLGSXKALSAIHLRPEFRIF 307
            ++ +G  V+ ++ E P     +W+ PP      +F  FL   K ++   L P F+ F
Sbjct: 1238 EKPSGETVLNQEKEAPKRTIRRWKPPPPDPTSPSFIAFLAILKGIADTALEPFFQTF 1294


>AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical
           protein Y37H2A.14 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 6   EPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAE--GDEERSRENRVTRRPLGQKLLQK 176
           +PK HD  P ++  ++K  KS +   K + + A    DE    E++V +    QK L+K
Sbjct: 76  DPKAHDESPKQMPLVKKSKKSQKKTNKEIVEVAPEVRDEAPQLESQVKKPKKTQKKLKK 134


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/76 (21%), Positives = 40/76 (52%)
 Frame = +3

Query: 6   EPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKNPK 185
           +PK    +   ++K +++  S QII +   K  E  EE+ ++ + + +   ++ L +  +
Sbjct: 410 KPKGRPPKKATLEKRKRL--SEQIIAQQQKKLDEFKEEKEKQEKTSDKKPKKQTLAEEIR 467

Query: 186 NRMFTTQSGVRLPISI 233
           +++   +S + LP S+
Sbjct: 468 DQLLRAKSKIVLPNSV 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,021
Number of Sequences: 27780
Number of extensions: 221926
Number of successful extensions: 517
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)