Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
 Frame = +1

Query: 157 VKSYYRKTRKTVCSLHKVACAS----RFRSMTCIFSRQFXSPKCHTPSTRVSDFSGT 315
           VK +   +  T CS H V C +    +     C   ++   P   + +T  S  + T
Sbjct: 280 VKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTST 336


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 235 MTCIFSRQFXSPKCHTPSTR 294
           M C FSR    P C   ++R
Sbjct: 1   MACPFSRDLSKPGCDEQTSR 20


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 141 TRRPLGQKLLQKNPKNRMF 197
           TR P+ Q+L   +P+N M+
Sbjct: 510 TREPVDQQLSGISPRNYMY 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,382
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)