Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060578.seq
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20280.1 68417.m02962 transcription initiation factor IID (TF...    29   1.5  
At2g13980.1 68415.m01554 hypothetical protein                          27   7.8  

>At4g20280.1 68417.m02962 transcription initiation factor IID
           (TFIID) 28 kDa subunit (TAFII-28) family protein similar
           to SP|Q15544 Transcription initiation factor TFIID 28
           kDa subunit (TAFII-28) (TAFII28) (TFIID subunit
           p30-beta) {Homo sapiens}; contains Pfam profile PF04719:
           hTAFII28-like protein conserved region
          Length = 210

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 21  DNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSREN 134
           D RP+ V++  K  K++ ++ +  +K+ + D+E   EN
Sbjct: 48  DERPVDVRRPMKKAKTSVVVTEAKNKDKDEDDEEEEEN 85


>At2g13980.1 68415.m01554 hypothetical protein
          Length = 171

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 194 VHYTKWRAPPD 226
           VH TKW+APPD
Sbjct: 8   VHNTKWKAPPD 18


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,649,391
Number of Sequences: 28952
Number of extensions: 208859
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)