Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060577.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   5.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 408  PPHATLHFEVELINIGDSPPATNVFKEIDADKDKC 512
            PP  T H++ +      + P T V + ID   DKC
Sbjct: 1176 PPSTTNHWQTKTTTSTTTRPTTTVSQLID---DKC 1207


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 575 FTTXRRE-PSASSNSRSLLRGRAFVLIGVDFLEHVCGRWRVTDVD 444
           F + R+  P+  S+  S ++        +DFL HV       DVD
Sbjct: 116 FASLRKSIPTMPSDKLSKIQTLKLAARYIDFLYHVLSNENALDVD 160


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 GPEVTELKTEVVSVPEGCT 174
           GP++TEL+ E +   +  T
Sbjct: 282 GPQITELEPETIESQDAIT 300


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 GPEVTELKTEVVSVPEGCT 174
           GP++TEL+ E +   +  T
Sbjct: 515 GPQITELEPETIESQDAIT 533


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 GPEVTELKTEVVSVPEGCT 174
           GP++TEL+ E +   +  T
Sbjct: 515 GPQITELEPETIESQDAIT 533


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 463 GESPMLINSTSKCNVAW 413
           G +PM+ NST +  V W
Sbjct: 339 GITPMIWNSTRRLFVVW 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,293
Number of Sequences: 336
Number of extensions: 3160
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)