Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060577.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 84 2e-17
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 64 2e-11
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 60 2e-10
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.63
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 27 2.5
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.3
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 5.8
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 5.8
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/69 (55%), Positives = 49/69 (71%)
Frame = +3
Query: 252 LDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHF 431
+DR PF IGVGQ+I+GWD+G+ M +GEK KLTI GYG RG +IPP++TL F
Sbjct: 41 VDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLF 100
Query: 432 EVELINIGD 458
+VEL+ I D
Sbjct: 101 DVELLAIND 109
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 184 KHGDMLTMHYTGTLDDGHKFDSS 252
K GD +TMHYTGTL +G KFDSS
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSS 40
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/65 (44%), Positives = 44/65 (67%)
Frame = +3
Query: 258 RDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEV 437
+ +PF F +G G+VI+GWD G+ M G +RK+TIPA + YG + IP ++TL FEV
Sbjct: 297 KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEV 355
Query: 438 ELINI 452
+L+ +
Sbjct: 356 KLVRV 360
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 115 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 252
+ P+ LK VV V G + +G + M Y G L++G FD +
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN 295
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +3
Query: 264 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVEL 443
+PFTF +G+ +VIKGWD G++ M VG +R + IPA++ YG + IP ++ L F+V+L
Sbjct: 300 KPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358
Query: 444 INI 452
+ +
Sbjct: 359 LAV 361
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 431 EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQALVPSL 303
++ ++GR H+AG + GC Q +FL+ V ++ SL
Sbjct: 996 QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 384 ERGAGN-VIPPHATLHFEVEL 443
E G GN +IPP + H+EVEL
Sbjct: 42 EPGHGNLIIPPDVSAHYEVEL 62
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 65 RRCAACLCWLPWPGPRSRV 121
R C C CWLP SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 381 GERGAGNVIPPHATLHFEVELINIGDSP 464
G+ G+G + P AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 109 TFAGPEVTELKTEVVSVPEGCTTKSKH 189
TF ++T L+ +++ +PEG +T KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,922
Number of Sequences: 5004
Number of extensions: 54414
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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