Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060577.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      116   2e-26
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   8e-16
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)                   29   3.5  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 28   8.1  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  116 bits (279), Expect = 2e-26
 Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
 Frame = +3

Query: 252 LDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHF 431
           LDR + F F +G G VI+GW+QGLLDMC+GEKRKLTIP  L YGE GAG  IPPHATL+ 
Sbjct: 66  LDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYM 125

Query: 432 EVELINI-GDSPPATNVFKEIDADKDKCSPAKK*ATI*RSRWFPPTGGEVSED--IKQML 602
           +VEL+ I G      NVF  ID + DK    ++     + +   P+  E S D  + ++ 
Sbjct: 126 DVELVEIQGSKESDPNVFGMIDKNNDKVLTQEEVKNYLKEQGGMPSDDEASHDTIVSEIF 185

Query: 603 XSHDK 617
              DK
Sbjct: 186 QQEDK 190



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +1

Query: 61  MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 237
           M  L  +L +VA +G      E   ELK EVVS PE CT K+  GD L+MHYTG L +G+
Sbjct: 1   MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60

Query: 238 KFDSS 252
           KFDSS
Sbjct: 61  KFDSS 65


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
 Frame = +3

Query: 264 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHF 431
           QPF F IG G VIKG++QG+  MCVG+KRK+ IP +L YG++G+    GN+   + TL +
Sbjct: 146 QPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTY 205

Query: 432 EVELINIGDSPPATNVFKEIDADKDK 509
            +EL ++   PP +++F  +D + D+
Sbjct: 206 NLELFDVRKPPPHSDMFSHMDENGDR 231



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 133 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 252
           +++ E   VP  C  K+K GD + +HYTG + DG  FD++
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTT 138


>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
          Length = 375

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 376 PKDAGIVSLRFSPTHMSSKPWSHPLITCPTPIWNVKG*SRSNSSRTCVRRLAC 218
           PK  G  S      H SS  W HP ++C + I  V   S S  S   + +++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSCGS-ISQVSCGSISKVSCGSISKVSC 308


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 488 FLEH-VCGRWRVTDVDQLHFEMQCSVGRNHVAGSALS--VAQGCGNSQFTFLTNAHVKQA 318
           F++H V  R  V+ ++ ++ E+   +    +    +S  V QG    Q   L NA+ +  
Sbjct: 444 FIKHSVLDRLHVSGLE-VNLELSTMLATQTINSQKISGLVVQGVNEKQDIHLPNAYTRDC 502

Query: 317 LVPSLDHLPNANLERK 270
           +    DH+P     R+
Sbjct: 503 IPAQRDHIPTPESARR 518


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 121 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 237
           P  T  K +++  P+G  TK +HG++ T+ +     DG+
Sbjct: 51  PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 87


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 527 LLRGRAFVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSAL 384
           L+   + + + V  +E V  R  + DV QLH + + S+GR  V+   L
Sbjct: 177 LIERESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLL 224


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 121 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 237
           P  T  K +++  P+G  TK +HG++ T+ +     DG+
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,258,490
Number of Sequences: 59808
Number of extensions: 442259
Number of successful extensions: 968
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)