Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060576.seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    36   0.006
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    30   0.36 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.48 
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    28   1.5  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   4.5  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   5.9  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   7.9  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
 Frame = +3

Query: 273 EELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDD------ 434
           +ELY  VEN+     AS+ +    N+++ H+ + I Q L +S +  + L+  +       
Sbjct: 51  QELYSGVENLTRADQASRCF----NILQHHMSSGI-QLLKDSAESFIQLEGTETDTNACT 105

Query: 435 ----CWRAHCRQMIMIRSIFLYLDRTYVLKTLVYIQFGTWGLDLF 557
               CW     ++ ++++IF Y+D+T++     Y       L LF
Sbjct: 106 VVVGCWNKWLERVEIVQNIFYYMDKTFLSHHPDYPTIEELSLSLF 150


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 414 FLKRMDDCWRAHCRQMIMIRSIFLYLDRTY 503
           FL  + + W+ H   M MI S+  YLD+ Y
Sbjct: 121 FLSSLVNSWKDHIVSMQMISSVLKYLDKVY 150


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 207 DMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIE-Q 383
           D+ ++  SC   S L  I YSL EL   V+++ S+ +   L+V      + H+  N++  
Sbjct: 578 DLGRSLHSCMSFSTLSEIRYSLREL---VQDLPSYSLFDTLWV----FYDKHIYPNVDPD 630

Query: 384 FLSESMDRQVFLK 422
           ++S  +D  V L+
Sbjct: 631 YISTLIDTLVSLE 643


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 522 YIQFGTWGLD-LFSSPYSNEYTCSR 593
           Y+ FGT+ +   ++SPY  EY+C++
Sbjct: 105 YLYFGTYRIKPWYTSPYPEEYSCAK 129


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 178 PNLPDNYQETTWSKLREAVVAIQTSNR*PIP*KNYI 285
           P+LP N+Q  TW    E++     SN+ P+P   ++
Sbjct: 167 PHLPINHQGNTWKHANESL----QSNQGPVPNTKFV 198


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 237 RHSDLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQV 413
           RH+D+K I  ++ EL Q  ++M +     +  V+       +V+ N+ +  ++ MDR +
Sbjct: 187 RHADIKRIERTIAELAQLFQDMATMVQEQEPMVDKIVTDAVNVRTNMGEG-TQHMDRAI 244


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 127 KPGVTAKKLIIKNFKSKPNLPDNYQETTWSK-LREAVVAIQT 249
           KP  T++K+ I+  ++KP  P+  QET   K  +E+ V +++
Sbjct: 135 KPLETSQKVEIETVETKPGEPEVKQETNLQKEKKESKVKLES 176


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 37  NEMSAEEKISNFSLVNPNSNGIKMSST 117
           NE++ +EK S  S V+ N++G + S+T
Sbjct: 73  NELADDEKKSQVSSVSSNNSGTESSAT 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,306
Number of Sequences: 5004
Number of extensions: 53687
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)