Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060576.seq
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 71 1e-12
04_04_1339 + 32760424-32760584,32762428-32764462 55 5e-08
02_05_0737 - 31328473-31330513,31331015-31331184 53 2e-07
08_01_0471 - 4147170-4149207,4150535-4150692 50 2e-06
04_04_1337 + 32737051-32737202,32737314-32737809 35 0.070
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 33 0.16
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746... 33 0.22
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 31 0.87
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 29 3.5
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467... 29 4.6
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722... 28 6.1
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135... 28 6.1
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 28 6.1
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/102 (34%), Positives = 52/102 (50%)
Frame = +3
Query: 252 KSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMD 431
+ ++ +E+LYQA ++C HK+ + LY + E H+ A I + +S D VFL +
Sbjct: 122 QKLSCDVEKLYQAAGDLCLHKLGANLYERIKKECEVHISAKISALVGQSPDLVVFLSLVQ 181
Query: 432 DCWRAHCRQMIMIRSIFLYLDRTYVLKTLVYIQFGTWGLDLF 557
W+ C QM++IR I L LD YV GL LF
Sbjct: 182 RTWQDFCDQMLIIRGIALLLDVKYVKNVANICSVWDMGLKLF 223
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 118 SMNKPGVTAKKLIIKNFKSKPNLPDNYQETTWSKLREAVVAI 243
++ +P K L IK +P LP N++E TW+ L++A+ AI
Sbjct: 79 TLPQPSAARKPLRIKI--GQPKLPTNFEEDTWAILKDAITAI 118
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/80 (33%), Positives = 42/80 (52%)
Frame = +3
Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
S EELY+ N+ HK +LY LT ++ H+K E +FL+ + W
Sbjct: 48 SFEELYRTAYNLVLHKHGLKLYDKLTENLKGHLKEMCRSI--EDAQGSLFLEELQRRWAD 105
Query: 447 HCRQMIMIRSIFLYLDRTYV 506
H + + MIR I +Y+DRT++
Sbjct: 106 HNKALQMIRDILMYMDRTFI 125
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/80 (36%), Positives = 45/80 (56%)
Frame = +3
Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
S EELY++ NM HK +LY L + +K I + + E+ +FL+ ++ W
Sbjct: 51 SFEELYRSAYNMVLHKYGEKLYDGLERTMTWRLK-EISKSI-EAAQGGLFLEELNAKWMD 108
Query: 447 HCRQMIMIRSIFLYLDRTYV 506
H + + MIR I +Y+DRTYV
Sbjct: 109 HNKALQMIRDILMYMDRTYV 128
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLS-ESMDRQVFLKRMDDCWR 443
S EELY+ N+ HK +LY LT +E H++ E +S E+ +FL + W
Sbjct: 47 SFEELYRTAYNLVLHKHGPKLYDKLTENMEDHLQ---EMRVSIEAAQGGLFLVELQRKWD 103
Query: 444 AHCRQMIMIRSIFLYLDRTYV 506
H + + MIR I +Y+DR ++
Sbjct: 104 DHNKALQMIRDILMYMDRVFI 124
>04_04_1337 + 32737051-32737202,32737314-32737809
Length = 215
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +3
Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHV---KANIEQFLSESMDRQVFLKRMDDC 437
+ E+LY+ V + +K +Y + + A V + ++ FL+ +
Sbjct: 45 NFEQLYRRVYEVVLNKHGELMYSEVATALTAEVEGLRTSLVAVADGGGGGGAFLRELLSK 104
Query: 438 WRAHCRQMIMIRSIFLYLDRTYVL 509
WR H + +R + +Y++RT+++
Sbjct: 105 WRRHTEAVAAVRDMVMYMERTFIV 128
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 279 LYQAVENMCS----HKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
LY + NMC+ H + QLY E ++ + + L + D + L+ + W
Sbjct: 45 LYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSLRDKHD-EFMLRELVKRWSN 103
Query: 447 HCRQMIMIRSIFLYLDRTYV 506
H + + F YLDR ++
Sbjct: 104 HKIMVRWLSRFFFYLDRYFI 123
>12_01_0812 -
7460448-7460507,7460595-7460672,7460772-7460981,
7461095-7461142,7461270-7461455,7461653-7461656,
7461766-7461893
Length = 237
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 408 QVFLKRMDDCWRAHCRQMIMIRSIFLYLDRTYVL-KTLVYIQ 530
+ LK + D WR H + +I F YLDR Y+L K+LV ++
Sbjct: 55 ETLLKGLVDRWRNHKKIVISETRFFFYLDRYYILRKSLVPLE 96
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +1
Query: 31 KINEMSAEEKI-SNFSLVNPNSNGIKMSSTSMNKPGVTAKKLIIKNFKSKPNLPDNYQE- 204
K +E +K+ SN+ ++ +G+K +S+ + K G + L++ N K + +N+
Sbjct: 523 KKDEQKVRKKLTSNYIIIETRKDGVKFTSSKLKKLGDQYQALLVINLKFLSQVFENFAAI 582
Query: 205 TTWSKLREAVVAIQTSNR*PIP*KNYIKPSKT 300
+ + ++ + TS+ PIP Y++P T
Sbjct: 583 LSELDVLQSFADLATSS--PIP---YVRPEIT 609
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 183 PSRQLSGNDMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVE 356
P+R G + Q SCC +S + A L +L+Q+ S + ++ V LTNL++
Sbjct: 418 PARPPWGWAVAQVLKSCCAYSSGVTAAILLSDLFQSWTEQ-SKSLTAKRKVELTNLLK 474
>12_02_0281 +
16744690-16744727,16744744-16745611,16746195-16746725,
16747737-16748549
Length = 749
Score = 28.7 bits (61), Expect = 4.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 417 LKRMDDCWRAHCR 455
++R+DDCWR +CR
Sbjct: 313 IERLDDCWRENCR 325
>06_03_1362 +
29571324-29571564,29571746-29571921,29571972-29572251,
29572949-29573085,29573174-29573401
Length = 353
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 45 ERRGENIKFFASESKF*RDKDVVNINEQAWRYCKKAD 155
+ R E K F+ KF DKD+ +IN++ + KK +
Sbjct: 295 KERDEKRKAFSRRRKFHEDKDIDSINDRNEHFNKKVE 331
>05_01_0188 -
1357074-1357098,1357811-1357941,1358572-1358667,
1358736-1358769,1358867-1358958,1359273-1359332,
1359376-1359435,1360016-1360525,1360645-1360719,
1360809-1361015
Length = 429
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 264 YSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLS 392
YS E++Y+A+ MC +M +++++ T + H +++F S
Sbjct: 247 YSQEDIYKAIHLMCLPEM--KIFLDTTRELAKHTNNLVDEFCS 287
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 559 RHHIAMNTLVPDSYSRWASYLLIERERGGDS 651
R I+MN+L S WA +LL +R G+S
Sbjct: 214 RPSISMNSLHRKSLEEWAKHLLTPSKRSGES 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,832
Number of Sequences: 37544
Number of extensions: 321216
Number of successful extensions: 776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -