Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060576.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19637| Best HMM Match : Cullin (HMM E-Value=0)                      37   0.018
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   31   1.2  
SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)                 30   1.5  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           30   1.5  
SB_24389| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55415| Best HMM Match : Death (HMM E-Value=1.3e-06)                 28   6.2  

>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 685

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 414 FLKRMDDCWRAHCRQMIMIRSIFLYLDRTYV 506
           FL  ++  W  H   M+MIR I +Y+DR YV
Sbjct: 32  FLDTLNAAWNDHQTSMVMIRDILMYMDRVYV 62


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 204  NDMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCSHKMASQ 326
            N +    G  CRH D + +   LEE+    + +C+H    Q
Sbjct: 4994 NQLGSTVGERCRHEDSELVHAQLEEVNHRWDELCNHSTGRQ 5034


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +3

Query: 288 AVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMD 404
           A+ N CS  M++Q   +L ++VE  + +N+E  LS +++
Sbjct: 530 ALLNQCSSAMSNQCSASLASIVEPVLASNVEPVLSSNVE 568



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 270 LEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMD 404
           L +   A+ N CS  +AS +   L + VE  + +N+E  LS +++
Sbjct: 532 LNQCSSAMSNQCSASLASIVEPVLASNVEPVLSSNVEPVLSSNVE 576


>SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 550 TCFRHHIAMNTLVPDSYSRWASYLLIERERGGDSVDIIFC*RVF 681
           +CF+H    N L+   +S +  +L+++R    +S+D     RVF
Sbjct: 297 SCFKHRFRSNLLLLRGFSTFIIFLMVKRNLHVESIDFSHSKRVF 340


>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
          Length = 200

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
 Frame = +3

Query: 21  QKSENQRNERRG------ENIKFFASESKF*RDKDVVNINEQAWRYCKKADN*EFQK*TE 182
           +K++ Q  ++ G      EN      E+    D+DVV I  + W+     +  + +K  +
Sbjct: 31  EKADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEK-KLEKCYD 89

Query: 183 PSRQLSGNDMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAH 362
            +     N+ +    S         I   L +   + EN+  +    +  ++    VEA 
Sbjct: 90  DTLASLLNNHDPLVTSTVTVRPADGILMRLRKQRNSEENLSDYCEKPKSLIHREMYVEAR 149

Query: 363 VKANIEQFLSESMDRQVFLKRMDDC 437
           VK  +  F+S+++++   ++  + C
Sbjct: 150 VKCEVHGFISKALEKVAAVRLREHC 174


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 204 NDMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCSHKMASQ 326
           N +    G  CRH D   +   LEE+    + +C+H    Q
Sbjct: 148 NQLGSTVGERCRHEDSDLVHAQLEEVNHRWDELCNHSTGRQ 188


>SB_24389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 154 IIKNFKSKPNLPDNYQETTWS 216
           +IK F + P +P+NYQ+TT S
Sbjct: 17  VIKEFDAFPKIPENYQQTTAS 37


>SB_55415| Best HMM Match : Death (HMM E-Value=1.3e-06)
          Length = 799

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = +3

Query: 180 EPSRQLSGNDMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCS---HKMASQLYVNLTNL 350
           E   + S N+   A+    R+ +       L+ L  A +       HKM S  Y++  +L
Sbjct: 517 EECEKFSSNETGSASERMFRYIEAAKPRLGLDNLQTAFKKSGQEELHKMLSD-YISAGHL 575

Query: 351 VEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLD 494
            +    + +  +  E + + +     D+CWR    Q+ + + +F   D
Sbjct: 576 RKVKFVSELAAYAPEILGQIMLRIDRDNCWRTVATQLDIPQRVFEQFD 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,507
Number of Sequences: 59808
Number of extensions: 378184
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)