Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060576.seq
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 63 2e-10
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 63 2e-10
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 39 0.003
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 39 0.003
U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical pr... 32 0.34
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.78
Z35598-7|CAA84650.2| 325|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81122-13|CAB03356.3| 368|Caenorhabditis elegans Hypothetical p... 28 5.5
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 28 5.5
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 27 9.6
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 27 9.6
AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical ... 27 9.6
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = +3
Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
S EELY+ M HK +LY L ++++ H+ A++ + ESM+ FL+ + + W
Sbjct: 50 SFEELYRNAYTMVLHKHGERLYNGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWAD 108
Query: 447 HCRQMIMIRSIFLYLDRTYVLKTLVYIQFGTWGLDLF 557
H M+MIR I +Y+DR YV + + GLD +
Sbjct: 109 HTVAMVMIRDILMYMDRIYVAQNNHVLPVYNLGLDAY 145
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/97 (34%), Positives = 53/97 (54%)
Frame = +3
Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
S EELY+ M HK +LY L ++++ H+ A++ + ESM+ FL+ + + W
Sbjct: 50 SFEELYRNAYTMVLHKHGERLYNGLKDVIQDHM-ASVRIRIIESMNSGSFLETVAESWAD 108
Query: 447 HCRQMIMIRSIFLYLDRTYVLKTLVYIQFGTWGLDLF 557
H M+MIR I +Y+DR YV + + GLD +
Sbjct: 109 HTVAMVMIRDILMYMDRIYVAQNNHVLPVYNLGLDAY 145
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +3
Query: 246 DLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKA------NIEQFLSESMDR 407
D K++ +LE L+ V ++C + LY L +V K+ +EQ +
Sbjct: 98 DRKTVT-TLEGLFSKVRSVCDKNQSKVLYDRLVAIVVQFAKSLKESLNAVEQVPLAEDNC 156
Query: 408 QVFLKRMDDCWRAHCRQMIMIRSIFLYLDR 497
+ +L++ W+A+ ++ +IR+IFL+LDR
Sbjct: 157 EQYLEKFGQIWQAYPVKINLIRNIFLHLDR 186
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +3
Query: 246 DLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKA------NIEQFLSESMDR 407
D K++ +LE L+ V ++C + LY L +V K+ +EQ +
Sbjct: 135 DRKTVT-TLEGLFSKVRSVCDKNQSKVLYDRLVAIVVQFAKSLKESLNAVEQVPLAEDNC 193
Query: 408 QVFLKRMDDCWRAHCRQMIMIRSIFLYLDR 497
+ +L++ W+A+ ++ +IR+IFL+LDR
Sbjct: 194 EQYLEKFGQIWQAYPVKINLIRNIFLHLDR 223
>U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical
protein PDB1.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +3
Query: 270 LEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAH 449
L + ++ K SQ Y N L+EAH K +++ E D+ ++ D W +
Sbjct: 2 LYNISSTIKKWRKQKKVSQFYENQNALLEAH-KEDMQTLTEEESDKAAEKEKRDLVWDSR 60
Query: 450 CRQMIMIRSIFLYLDRTYV 506
+ +I ++ L + ++ V
Sbjct: 61 ITTLTIILNVSLIIAKSIV 79
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/86 (25%), Positives = 35/86 (40%)
Frame = +3
Query: 180 EPSRQLSGNDMEQAAGSCCRHSDLKSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEA 359
EP R + E H D K A +LE + VE + + A L + V
Sbjct: 43 EPDRMEEDDAEEIPQNQVVLHEDKKYYATALEVYGEGVETLVQEEDAQPLTEPIVKPVSK 102
Query: 360 HVKANIEQFLSESMDRQVFLKRMDDC 437
E+FL E++ ++ +L + DC
Sbjct: 103 KKFQAAERFLPETVYKKEYLADLMDC 128
>Z35598-7|CAA84650.2| 325|Caenorhabditis elegans Hypothetical
protein F10F2.3 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 471 RSIFLYLDRTYVLKTLVYIQFG-TWGLDLFSSPYSNEYTCSRLV 599
RSI +L++ Y L +G TWG YS +TC L+
Sbjct: 93 RSIQYFLEQNYTEAELYATTWGDTWGSGSMLDTYSTIHTCGNLI 136
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +3
Query: 315 MASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLD 494
++ +LY + ++ HV+ + + +D + L+ WR I I +F YL+
Sbjct: 54 LSERLYNEVKACIQEHVRQKRQDIVD--VDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLN 111
Query: 495 RTYV 506
+ +V
Sbjct: 112 KQFV 115
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +3
Query: 315 MASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLD 494
++ +LY + ++ HV+ + + +D + L+ WR I I +F YL+
Sbjct: 71 LSERLYNEVKACIQEHVRQKRQDIVD--VDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLN 128
Query: 495 RTYV 506
+ +V
Sbjct: 129 KQFV 132
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +3
Query: 315 MASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLD 494
++ +LY + ++ HV+ + + +D + L+ WR I I +F YL+
Sbjct: 54 LSERLYNEVKACIQEHVRQKRQDIVD--VDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLN 111
Query: 495 RTYV 506
+ +V
Sbjct: 112 KQFV 115
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +3
Query: 315 MASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLD 494
++ +LY + ++ HV+ + + +D + L+ WR I I +F YL+
Sbjct: 130 LSERLYNEVKACIQEHVRQKRQDIVD--VDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLN 187
Query: 495 RTYV 506
+ +V
Sbjct: 188 KQFV 191
>Z81122-13|CAB03356.3| 368|Caenorhabditis elegans Hypothetical
protein T13F2.5 protein.
Length = 368
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 237 RHSDLKSIAYSLEELYQAVENM 302
+ S KS+ YSL E YQ VEN+
Sbjct: 215 KFSTRKSVTYSLSERYQIVENL 236
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 485 IFRPNLCPQNPSIH 526
+FRP++CP +PSIH
Sbjct: 67 LFRPSVCPLHPSIH 80
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 10 ESCSKRVKINEM-SAEEKISNFSLVNPNSNGIKMSSTSMNKPGVTAKKLIIKNFK 171
++C + KIN + S ++KI F + P+ G K++ + V +KLI+KNFK
Sbjct: 448 DNCDEEKKINLLDSLKDKIPEF-IHTPD--GAKLAIKLIWFAPVKERKLIVKNFK 499
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +3
Query: 315 MASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQMIMIRSIFLYLD 494
+ +LY + ++ HV+ + + +D + L+ WR I I +F YL+
Sbjct: 54 LIERLYNEVKACIQEHVRQKRQDIVD--VDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLN 111
Query: 495 RTYV 506
+ +V
Sbjct: 112 KQFV 115
>AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical
protein Y50E8A.10 protein.
Length = 209
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 103 KMSSTSMNKPGVTAKKLIIKNFKSKPNLPDNYQETT 210
+ + N P VTAK + K KS PN P+ + T
Sbjct: 127 RSGAAETNGPPVTAKSALSKTAKSVPNAPNTSVKPT 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,861
Number of Sequences: 27780
Number of extensions: 295857
Number of successful extensions: 878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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