Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060576.seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C...    94   9e-20
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo...    58   6e-09
At1g69670.1 68414.m08018 cullin, putative contains similarity to...    57   1e-08
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    36   0.019
At1g59800.1 68414.m06733 cullin-related similar to cullin 3 [Hom...    34   0.078
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL...    32   0.31 
At1g30620.1 68414.m03745 UDP-D-xylose 4-epimerase, putative (MUR...    25   2.7  
At4g07380.1 68417.m01133 hypothetical protein                          29   2.9  
At2g40630.1 68415.m05011 expressed protein                             29   3.9  
At5g26150.1 68418.m03110 protein kinase family protein contains ...    28   5.1  
At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase fam...    25   7.7  
At2g34850.1 68415.m04279 NAD-dependent epimerase/dehydratase fam...    25   8.1  
At5g37010.1 68418.m04438 expressed protein                             27   8.9  
At3g03540.1 68416.m00355 phosphoesterase family protein similar ...    27   8.9  
At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2 (GI:17...    27   8.9  

>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
           Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
           profile PF00888: Cullin family
          Length = 792

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 43/102 (42%), Positives = 62/102 (60%)
 Frame = +3

Query: 252 KSIAYSLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMD 431
           K I++ LE LYQAV+N+C HK+  +LY  +    E H+ A ++  + ++ D  VFL R++
Sbjct: 110 KKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEEHISAALQSLVGQNTDLTVFLSRVE 169

Query: 432 DCWRAHCRQMIMIRSIFLYLDRTYVLKTLVYIQFGTWGLDLF 557
            CW+  C QM+MIRSI L LDR YV++          GL LF
Sbjct: 170 KCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSLWEMGLQLF 211



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 55  EKISNFSLV-NPNSNGIKMSSTSMNKPGVTAKKLIIKNFKSKPNLPDNYQETTWSKLREA 231
           +K+  F +  +P      +S      P  T KK +IK  K+KP LP N++E TW KL+ A
Sbjct: 44  DKVVGFHMEEDPTPAAANLSRKKATLPQPT-KKFVIKLNKAKPTLPTNFEENTWEKLQSA 102

Query: 232 VVAI 243
           + AI
Sbjct: 103 IRAI 106


>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
           3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
           contains Pfam profile PF00888: Cullin family
          Length = 732

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/83 (34%), Positives = 44/83 (53%)
 Frame = +3

Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
           S EELY+   NM  HK   +LY      + +H+K   +  L E+     FL+ ++  W  
Sbjct: 48  SFEELYRNAYNMVLHKFGEKLYTGFIATMTSHLKEKSK--LIEAAQGGSFLEELNKKWNE 105

Query: 447 HCRQMIMIRSIFLYLDRTYVLKT 515
           H + + MIR I +Y+DRTY+  T
Sbjct: 106 HNKALEMIRDILMYMDRTYIEST 128


>At1g69670.1 68414.m08018 cullin, putative contains similarity to
           Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
           [Homo sapiens]; contains Pfam profile PF00888: Cullin
           family
          Length = 732

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/83 (36%), Positives = 42/83 (50%)
 Frame = +3

Query: 267 SLEELYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
           S EELY+   NM  HK   +LY  L   +  H+K   +    E      FL+ ++  W  
Sbjct: 48  SFEELYRNAYNMVLHKYGDKLYTGLVTTMTFHLKEICKSI--EEAQGGAFLELLNRKWND 105

Query: 447 HCRQMIMIRSIFLYLDRTYVLKT 515
           H + + MIR I +Y+DRTYV  T
Sbjct: 106 HNKALQMIRDILMYMDRTYVSTT 128


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +3

Query: 279 LYQAVENMCS----HKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRA 446
           LY  + NMC+    H  + QLY       E ++ + +   L E  D +  L+ +   W  
Sbjct: 42  LYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVLPALREKHD-EFMLRELFKRWSN 100

Query: 447 HCRQMIMIRSIFLYLDRTYVLK 512
           H   +  +   F YLDR ++ +
Sbjct: 101 HKVMVRWLSRFFYYLDRYFIAR 122


>At1g59800.1 68414.m06733 cullin-related similar to cullin 3 [Homo
           sapiens] GI:3639052
          Length = 255

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +3

Query: 279 LYQAVENMCSHKMASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAHCRQ 458
           ++ A   +C++K   QLY     L+E +    +   L E  D +  L+ +   W AH   
Sbjct: 43  MHTATYRICAYKNPQQLYDKYRELIENYAIQTVLPSLREKHD-ECMLRELAKRWNAHKLL 101

Query: 459 MIMIRSIFLYLDRTYVLK 512
           + +     +YLD +++ K
Sbjct: 102 VRLFSRRLVYLDDSFLSK 119


>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
           [Homo sapiens] GI:1381142
          Length = 374

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 276 ELYQAVENMCSHKM--ASQLYVNLTNLVEAHVKANIEQFLSESMDRQVFLKRMDDCWRAH 449
           +LY  + +MC  +   + QLY     ++E +    +   L E  D  + L+ +   W  H
Sbjct: 47  KLYTIIYDMCVQRSDYSQQLYEKYRKVIEDYTIQTVLPSLREKHDEDM-LRELVKRWNNH 105

Query: 450 CRQMIMIRSIFLYLDRTYVLKTLVYI 527
              +  +   F+Y+DR  V ++ + I
Sbjct: 106 KIMVKWLSKFFVYIDRHLVRRSKIPI 131


>At1g30620.1 68414.m03745 UDP-D-xylose 4-epimerase, putative (MUR4)
           similar to SP|P55180 UDP-glucose 4-epimerase (EC
           5.1.3.2) from Bacillus subtilis, GI:3021357
           UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains TIGRfam profile
           TIGR01179: UDP-glucose 4-epimerase
          Length = 419

 Score = 25.4 bits (53), Expect(2) = 2.7
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = +3

Query: 330 YVNLTNLVEAHVKA 371
           Y+++T+LV+AHVKA
Sbjct: 306 YIDVTDLVDAHVKA 319



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 183 PSRQLSGNDMEQAAGSCCR 239
           P  Q+ G D + A G+C R
Sbjct: 286 PGLQIKGTDYKTADGTCVR 304


>At4g07380.1 68417.m01133 hypothetical protein 
          Length = 168

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 4   HEESCSKRVKINEMSAE-EKISNFSLVNPNSNGIKMSSTSMNKPGVTAKKLIIKNFKSKP 180
           +EE   + V +NE + E +K+   +  N   NG ++ +  +    + AKK ++KN    P
Sbjct: 91  NEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVELPAKKRVVKNKAGLP 150

Query: 181 NL 186
            +
Sbjct: 151 GV 152


>At2g40630.1 68415.m05011 expressed protein
          Length = 535

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 7   EESCSKRVKINEMSAEEKISNFSLVNPNSNGIKMSSTSMNKPGVTAKKLI 156
           +E  SKRVK+ +++++ K S+    + NSN ++  + S  K    +K L+
Sbjct: 35  DELGSKRVKVPDLASDAKTSSLQ-SHGNSNSVQQPNLSSEKLSKVSKVLV 83


>At5g26150.1 68418.m03110 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 703

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 222 AGSCCRHSDLKSIAYSLEELYQAVENMCSHK 314
           A S   H+D++   YS+EE+ +A E   +H+
Sbjct: 396 AVSALAHNDVRYRKYSIEEIEEATERFANHR 426


>At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase family
           protein similar to SP|P55180 UDP-glucose 4-epimerase (EC
           5.1.3.2) from Bacillus subtilis, GI:3021357
           UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 436

 Score = 25.4 bits (53), Expect(2) = 7.7
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = +3

Query: 330 YVNLTNLVEAHVKA 371
           Y+++T+LV+AHVKA
Sbjct: 330 YIDVTDLVDAHVKA 343



 Score = 20.6 bits (41), Expect(2) = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 183 PSRQLSGNDMEQAAGSCCR 239
           P  Q+ G D + + G+C R
Sbjct: 310 PGLQVKGTDYKTSDGTCIR 328


>At2g34850.1 68415.m04279 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-galactose 4-epimerase from
           Cyamopsis tetragonoloba GI:3021357, Lactococcus lactis
           GI:3703056; contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 236

 Score = 25.4 bits (53), Expect(2) = 8.1
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = +3

Query: 330 YVNLTNLVEAHVKA 371
           Y+++T+LV+AHVKA
Sbjct: 124 YIDVTDLVDAHVKA 137



 Score = 20.6 bits (41), Expect(2) = 8.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 183 PSRQLSGNDMEQAAGSCCR 239
           P  Q+ G D +   G+C R
Sbjct: 104 PGLQIKGTDYKTVDGTCVR 122


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 73  SLVNPNSNGIKMSSTSMNKPG 135
           S +NPNS+G  ++S++ N+PG
Sbjct: 222 SEINPNSSGNSVNSSNNNRPG 242


>At3g03540.1 68416.m00355 phosphoesterase family protein similar to
           SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
           {Mycobacterium tuberculosis}; contains Pfam profile
           PF04185: Phosphoesterase family
          Length = 521

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 631 RERGGDSVDIIFC 669
           RERGGD  DI+FC
Sbjct: 482 RERGGDENDIVFC 494


>At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2
           (GI:1770390) [Homo sapiens]; similar to ataxin-2
           (GI:3005020) [Mus musculus]
          Length = 587

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 37  NEMSAEEKISNFSLVNPNSNGIKMSSTSMNKPGVTAKKL--IIKNFKSKPN 183
           +E SA    SN  +++P+S+G   S  S   P     KL    K+FK  P+
Sbjct: 439 SENSAASSASNLPILSPSSSGSLSSEKSTLNPNAKEFKLNPNAKSFKPSPS 489


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,913
Number of Sequences: 28952
Number of extensions: 273860
Number of successful extensions: 749
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)