Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060575.seq
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    32   0.096
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.3  

>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 48  HEEFQMTLEYPFLKLAFNAKNKRKVVEKLANLFGQKETDNIRIQSITNNPTSIIWYNTSL 227
           H+ +   L Y  L+  F +    K+     N    +   N R+Q I N   S+I    ++
Sbjct: 147 HQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEALINSRVQDIVNGLFSVIVTLGTI 206

Query: 228 PMDRCP 245
           P+ RCP
Sbjct: 207 PIIRCP 212


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 379 ERVESYRHHFEVLVEDLIDVFAESAASRAAIVY 281
           +  ES+RH   +LVE+     A+  +S+A +V+
Sbjct: 280 DETESFRHALRILVENYHSKHAKYESSKAVLVF 312


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 191  IGNALYPNIISLLLSEQVGELLDNFTFVFSVEGE 90
            + N  + + + L L E +  L D FTF+   E E
Sbjct: 1108 VNNTEFKSQVYLYLREWINALFDRFTFLLGKESE 1141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,005
Number of Sequences: 5004
Number of extensions: 37022
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)