Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060575.seq
(728 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L19711-1|AAA81779.1| 895|Homo sapiens dystroglycan protein. 40 0.007
BC014616-1|AAH14616.1| 895|Homo sapiens dystroglycan 1 (dystrop... 40 0.007
BC012740-1|AAH12740.1| 895|Homo sapiens dystroglycan 1 (dystrop... 40 0.007
CR533511-1|CAG38542.1| 344|Homo sapiens ZDHHC4 protein. 30 9.8
BC117417-1|AAI17418.1| 1222|Homo sapiens sortilin-related VPS10 ... 30 9.8
AL596118-1|CAH70023.1| 1222|Homo sapiens VPS10 domain receptor p... 30 9.8
AL445492-1|CAH70477.1| 1222|Homo sapiens VPS10 domain receptor p... 30 9.8
AL365449-1|CAH70813.1| 1222|Homo sapiens VPS10 domain receptor p... 30 9.8
AL358949-1|CAH72221.1| 1222|Homo sapiens VPS10 domain receptor p... 30 9.8
AL353900-2|CAI64579.1| 1222|Homo sapiens VPS10 domain receptor p... 30 9.8
AL161646-1|CAH70335.1| 1222|Homo sapiens VPS10 domain receptor p... 30 9.8
AB028982-1|BAA83011.2| 1222|Homo sapiens KIAA1059 protein protein. 30 9.8
>L19711-1|AAA81779.1| 895|Homo sapiens dystroglycan protein.
Length = 895
Score = 40.3 bits (90), Expect = 0.007
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 111 KRKVVEKLANLFGQKETDNIRIQSITNNPTSIIWYNTSLPMDRCP 245
K +V+KLA FG + I +Q+IT + W N +LP++ CP
Sbjct: 626 KIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNTLPLEPCP 670
Score = 35.5 bits (78), Expect = 0.20
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 513 VVIVCMILLGGVIACVLYRKPRTXKLIFGDXEERXTFPLKGIXPYXFKTXFEE 671
VV+ ++L+ G+IA + YRK R KL E++ TF KG+ P F ++
Sbjct: 758 VVVAAILLIAGIIAMICYRKKRKGKLTL---EDQATFIKKGV-PIIFADELDD 806
>BC014616-1|AAH14616.1| 895|Homo sapiens dystroglycan 1
(dystrophin-associated glycoprotein 1) protein.
Length = 895
Score = 40.3 bits (90), Expect = 0.007
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 111 KRKVVEKLANLFGQKETDNIRIQSITNNPTSIIWYNTSLPMDRCP 245
K +V+KLA FG + I +Q+IT + W N +LP++ CP
Sbjct: 626 KIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNTLPLEPCP 670
Score = 35.5 bits (78), Expect = 0.20
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 513 VVIVCMILLGGVIACVLYRKPRTXKLIFGDXEERXTFPLKGIXPYXFKTXFEE 671
VV+ ++L+ G+IA + YRK R KL E++ TF KG+ P F ++
Sbjct: 758 VVVAAILLIAGIIAMICYRKKRKGKLTL---EDQATFIKKGV-PIIFADELDD 806
>BC012740-1|AAH12740.1| 895|Homo sapiens dystroglycan 1
(dystrophin-associated glycoprotein 1) protein.
Length = 895
Score = 40.3 bits (90), Expect = 0.007
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 111 KRKVVEKLANLFGQKETDNIRIQSITNNPTSIIWYNTSLPMDRCP 245
K +V+KLA FG + I +Q+IT + W N +LP++ CP
Sbjct: 626 KIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNTLPLEPCP 670
Score = 35.5 bits (78), Expect = 0.20
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 513 VVIVCMILLGGVIACVLYRKPRTXKLIFGDXEERXTFPLKGIXPYXFKTXFEE 671
VV+ ++L+ G+IA + YRK R KL E++ TF KG+ P F ++
Sbjct: 758 VVVAAILLIAGIIAMICYRKKRKGKLTL---EDQATFIKKGV-PIIFADELDD 806
>CR533511-1|CAG38542.1| 344|Homo sapiens ZDHHC4 protein.
Length = 344
Score = 29.9 bits (64), Expect = 9.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 489 PRXVHHLGVVIVCMILLGGVIACVLY 566
PR V LG V+V LLGG + VLY
Sbjct: 254 PRIVFMLGFVVVLSFLLGGYLLSVLY 279
>BC117417-1|AAI17418.1| 1222|Homo sapiens sortilin-related VPS10
domain containing receptor 3 protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AL596118-1|CAH70023.1| 1222|Homo sapiens VPS10 domain receptor
protein SORCS 3 (SORCS3) protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AL445492-1|CAH70477.1| 1222|Homo sapiens VPS10 domain receptor
protein SORCS 3 (SORCS3) protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AL365449-1|CAH70813.1| 1222|Homo sapiens VPS10 domain receptor
protein SORCS 3 (SORCS3) protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AL358949-1|CAH72221.1| 1222|Homo sapiens VPS10 domain receptor
protein SORCS 3 (SORCS3) protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AL353900-2|CAI64579.1| 1222|Homo sapiens VPS10 domain receptor
protein SORCS 3 (SORCS3) protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AL161646-1|CAH70335.1| 1222|Homo sapiens VPS10 domain receptor
protein SORCS 3 (SORCS3) protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
>AB028982-1|BAA83011.2| 1222|Homo sapiens KIAA1059 protein protein.
Length = 1222
Score = 29.9 bits (64), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 352 FEVLVEDLIDVFAESAASRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVML 179
F L ++L+ + V LA L DS+ GH S L+L ++ VGL V L
Sbjct: 1085 FNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFL 1142
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,494,880
Number of Sequences: 237096
Number of extensions: 1388638
Number of successful extensions: 7035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7035
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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