Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060575.seq
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.9  
U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical
           protein F22D6.1 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 301 SRAAIVYDDHLAELFDSAFGHLSIGKLVLYHIMEVGLLVMLCILILSVSFCPN-RLASF 128
           +RAA + +  L   +        IGK+++ H+ +VGL V    L++ +  CP+  L SF
Sbjct: 175 TRAAFMKEARLMRKYSHPHIVRIIGKIIVKHLPKVGLAVDAHPLMIVMEMCPHGSLLSF 233


>Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical
           protein R08H2.13 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -2

Query: 259 FDSAFGHLSIGKLV----LYHIMEVGLLVMLCILILSVSFCPNRLASFS 125
           F  +FG ++IGKL+     Y +M V L +      LSV+ CP +L  FS
Sbjct: 86  FSKSFGSIAIGKLMELGSCYGMMIVLLTINFYYRYLSVT-CPAKLTRFS 133


>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 229 GKLVLYHIMEVGLLVMLCILILSVSFCPNRLASF 128
           G  VL+  + VGL V +C+  LS  + P  L+ F
Sbjct: 441 GDFVLHTFLNVGLQVSICVYYLSPVYIPIALSLF 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,691
Number of Sequences: 27780
Number of extensions: 213342
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)