Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060575.seq
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.18 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.32 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.32 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.32 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.42 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 42  IRHEEFQMTLEYPFLKLAFNAKNKRKVVEKLANL 143
           +R+E+F    + P+L + FN   +RK +    NL
Sbjct: 214 VRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNL 247


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 42  IRHEEFQMTLEYPFLKLAFNAKNKRKVVEKLANL 143
           +R+E+F    + P+L + FN   +RK +    N+
Sbjct: 218 VRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNI 251


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 42  IRHEEFQMTLEYPFLKLAFNAKNKRKVVEKLANL 143
           +R+E+F    + P+L + FN   +RK +    N+
Sbjct: 218 VRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNI 251


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -2

Query: 232 IGKLVLYHIMEVGLLVMLCILILSVSF 152
           +GK +L+ ++ VGL V++ I+IL+V +
Sbjct: 298 LGKYLLFTMILVGLSVVITIVILNVHY 324



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  RHEEFQMTLEYPFLKLAFNAKNKRKVVEKLANL 143
           RH+++    + P+  + FN   +RK +    NL
Sbjct: 210 RHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNL 242


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 24  IPRAXGIRHEEFQMTLEYPFLKLAFNAKNKRKVVEKLANL 143
           I +   +R+E F +  E P+  + FN   +RK +    NL
Sbjct: 204 IIKVPAVRNEAFYICCEEPYPDIVFNITLRRKTLFYTVNL 243


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 397 EHQSXXGPAGAVPRRAQLAEQQDGQ 471
           +HQ   G A  VP++ Q  +QQ  Q
Sbjct: 23  QHQQHYGAAVQVPQQTQSVQQQSQQ 47


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 51  RAEFLQPGGSTSSRAA 4
           + EFL PGGS   R A
Sbjct: 67  KCEFLNPGGSVKDRIA 82


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 239 SVHWQASVVPYNGGRIIG 186
           S+HW+A  +P    R++G
Sbjct: 5   SIHWEARYLPAGPPRLLG 22


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 45  RHEEFQMTLEYPFLKLAFNAKNKRKVVEKLANL 143
           R+EE+      P+  + FN   +RK +    NL
Sbjct: 224 RNEEYYPCCTEPYSDITFNITMRRKTLFYTVNL 256


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 419 PPALYPGAPNSQN 457
           PP   PGAP SQN
Sbjct: 47  PPGGPPGAPPSQN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,007
Number of Sequences: 438
Number of extensions: 2582
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)