Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060575.seq
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    31   1.0  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    31   1.0  
At2g35470.1 68415.m04345 expressed protein                             30   1.4  
At5g55640.1 68418.m06938 expressed protein                             29   3.2  
At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /...    29   4.2  
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    28   7.3  
At3g62900.1 68416.m07066 expressed protein ; expression supporte...    27   9.6  

>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 104 SVEGELQERILQGHLELLVPNSXSPGDPLVL 12
           S+  EL+++I QGH  +L+ N  S  DP V+
Sbjct: 208 SIFSELEDKIRQGHNIVLISNHQSEADPAVI 238


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 104 SVEGELQERILQGHLELLVPNSXSPGDPLVL 12
           S+  EL+++I QGH  +L+ N  S  DP V+
Sbjct: 208 SIFSELEDKIRQGHNIVLISNHQSEADPAVI 238


>At2g35470.1 68415.m04345 expressed protein
          Length = 167

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
 Frame = -2

Query: 400 VLLRAXAERVESY--RHHFEVLVEDLIDVFAESAASRAAIVYDDHLAELF--------DS 251
           + L + A ++ SY  R      ++DL    +  ++S +A+ YDDH  + F         S
Sbjct: 4   ISLDSSASKLHSYGGRKDDTYDIDDLKPASSSPSSSSSAVDYDDHELKDFKPRRLSSLQS 63

Query: 250 AFGHLSIGKLVLYHIMEVGLLVMLCILILSV-SFCPNR--LASFSTTLRLFLALKASFKN 80
            F   +  +  L H   + +L ++C +IL + S+ P++  LA F+  +R    L++S +N
Sbjct: 64  PFVTTNQKQEKLVHF--IPILTLICFIILYLTSYAPSQSDLAQFNGFMRPSKHLESSDEN 121

Query: 79  G 77
           G
Sbjct: 122 G 122


>At5g55640.1 68418.m06938 expressed protein
          Length = 149

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 SDVDNSQPARPXRGAEHQSXXGPAGAVPRRAQ 447
           S+V+ S+P+ P   AE     GP GA P + Q
Sbjct: 42  SEVETSKPSSPKSKAEENIYLGPHGAPPSQLQ 73


>At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Brassica napus]
           GI:1212786; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 176 YPNIISLLLSEQVGELLDNFTFVFSVEGELQERILQGHLELLVPNSXSPGD 24
           YP +  + L + VGE +    + F  +      IL  ++ L + NS SP D
Sbjct: 364 YPLVSHIRLHDIVGENISTAGYFFGTKESPFTSILLSNISLSIKNSASPAD 414


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 403 GVLLRAXAERVESYRHHFEVLVEDLIDVFAESAA 302
           G +L   AE++E+Y    E  VE+LI   AES A
Sbjct: 258 GTVLIHSAEQLENYAKTEEAKVEELIKAVAESGA 291


>At3g62900.1 68416.m07066 expressed protein ; expression supported
           by MPSS
          Length = 1401

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SITNNPTSIIWYNTSLPMDRC 242
           S T +PTSI+   TSLP+D C
Sbjct: 218 SPTESPTSILNVMTSLPVDHC 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,803
Number of Sequences: 28952
Number of extensions: 200615
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)