Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060574.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7Q9Y8 Cluster: ENSANGP00000011734; n=4; Endopterygota|...    58   2e-07
UniRef50_Q95RC5 Cluster: LD44506p; n=4; Eukaryota|Rep: LD44506p ...    43   0.008
UniRef50_UPI0000588102 Cluster: PREDICTED: hypothetical protein;...    34   2.8  
UniRef50_P51838 Cluster: DNA repair protein recO; n=3; Coxiella ...    33   6.5  

>UniRef50_Q7Q9Y8 Cluster: ENSANGP00000011734; n=4;
           Endopterygota|Rep: ENSANGP00000011734 - Anopheles
           gambiae str. PEST
          Length = 490

 Score = 58.4 bits (135), Expect = 2e-07
 Identities = 27/40 (67%), Positives = 34/40 (85%), Gaps = 2/40 (5%)
 Frame = +3

Query: 255 NDAWDLGDDE--IISGIXDTKISKSISETAALNVINSHRN 368
           +DAWDLGDDE  IISG+ DT+ISK  S+TAALNVI +H++
Sbjct: 51  SDAWDLGDDEFCIISGVVDTRISKRASQTAALNVIKTHKS 90


>UniRef50_Q95RC5 Cluster: LD44506p; n=4; Eukaryota|Rep: LD44506p -
           Drosophila melanogaster (Fruit fly)
          Length = 546

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
 Frame = +3

Query: 168 ARCTGEALPKGH-PKRGYVRVVVSAIPGVSNDAWDLGDDE--IIS---------GIXD-T 308
           A   G A+ +G  P  G V         VS DAWD+GDDE  IIS         G  D  
Sbjct: 73  AAAVGVAVGRGAAPGSGMVSTFTEYQKSVS-DAWDMGDDEFCIISSTEAAAAAVGAGDAA 131

Query: 309 KISKSISETAALNVINSHRNSTKNVNRS 392
             S+ +S+T ALNVI +H  S +N N S
Sbjct: 132 HFSRQVSQTVALNVIETHSRSNQNHNAS 159


>UniRef50_UPI0000588102 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 498

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 195 KGHPKRGYVRVVVSAIPGVSNDAWDLGDDEIISGIXDTKISKSISETAALNVIN--SHRN 368
           +G     Y +   + +PG ++DAW++ DDE+I  +   K+S  +  T    +++   HR 
Sbjct: 23  EGKRTSSYWKTNTNKVPGSTSDAWEVNDDELIL-MTSRKLSVEVHGTTVPGLVHVRGHR- 80

Query: 369 STKNVNRSD 395
           S +N+  S+
Sbjct: 81  SDRNIADSE 89


>UniRef50_P51838 Cluster: DNA repair protein recO; n=3; Coxiella
           burnetii|Rep: DNA repair protein recO - Coxiella
           burnetii
          Length = 231

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 86  SNCTLLWKITNPNMTRVCCLTRSGGHLSALYRGGL 190
           SN +L+ ++  PN  RVC L RS   L + Y+G L
Sbjct: 19  SNTSLILELLTPNHGRVCALARSARGLKSRYKGKL 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,631,801
Number of Sequences: 1657284
Number of extensions: 10639042
Number of successful extensions: 27468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27466
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)