Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060574.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    32   0.068
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    29   0.83 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.5  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   5.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   5.9  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   7.8  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 422 TLNFTLNLHVTSVYVFSAVSVGIYDVQGCCFRYTFRYFSVRYPRDDLVVA 273
           T+N  L   + +V +   VS  I DVQ  C +   R FS+ + RD +V+A
Sbjct: 606 TVNVLLTTLMDNVSISEEVSEHIKDVQILCLQVYPRLFSLGHDRDSIVIA 655


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 216 YVRVVVSAIPGVSNDAWDLGDDEIISGIXDTKISKSISETAALNVI 353
           +V  +V+A  G SND   L DDE  S I   K S  IS TA++ ++
Sbjct: 373 FVNALVNA--GYSNDRLILVDDEKTSWIYKNKESGLISATASIGLL 416


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 474 SGIRQYPGRPRPXGYQRS-LHARRAVS--LNWSASSRYTISTVRQPRRTSNRF 623
           SGI   P  P   G+     H +  +S  L  S+S    +ST++ P +TSN F
Sbjct: 266 SGIPPVPTIPPNIGHSTDHQHPKANISGSLTKSSSESKNLSTIQSPLKTSNSF 318


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 477 GIRQYPGRPRPXGY---QRSLHARRAVSLN 557
           GIR YPGR  P G    + S+ AR+ V L+
Sbjct: 182 GIRGYPGRSNPKGRADGELSIFARQCVLLS 211


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 531 HARRAVSLNWSASSRYTIST 590
           H    VS++WSA SR+ IST
Sbjct: 145 HFDDIVSISWSADSRFFIST 164


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 358 EFMTFKAAVSDILFDILVSXIPEMISSSPRSQASLLT 248
           + +TF + +SD    I+V  I  +    PR Q S+LT
Sbjct: 383 QIVTFMSDISDNFKIIVVDAIRSLCLKFPRKQDSMLT 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,109
Number of Sequences: 5004
Number of extensions: 42824
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)