Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060574.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    29   4.6  
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    28   8.0  

>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 204 PKRGYVRVVVSAIPGVSNDAWDLGDDEIISGIXDTKISKSI 326
           P+   +  V   IPG S+D+WDLG D++I+ +     S+ +
Sbjct: 115 PRSDQLPYVGLGIPG-SHDSWDLGLDDMITWVGFVNCSQEL 154


>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 183 EALPKGHPKRGYVRVVVSAIPGVSNDAWDLGDDEIISGIXDTKISKSISETAAL 344
           EAL  G      +RV VS + G  +D W L   E ++ +  T  ++ +S+ A L
Sbjct: 838 EALGWGLTGEEILRVAVSGLEGTQDDDWKL--QEALASLCATVFNRIVSKDADL 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,313
Number of Sequences: 37544
Number of extensions: 297496
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)