Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060574.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                30   1.5  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_21483| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-17)                 28   6.2  

>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 154  WRTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASVTTPG 267
            +++P  + PG PY    P+    G++Y     S T PG
Sbjct: 999  YQSPPFSQPGAPYNTTKPSYTQPGTTYNTTSTSYTQPG 1036


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 474 SGIRQYPGRPRPXGYQRSLHARRAVSLNWSASS-RYTISTVRQPRRTSNRFSWSGD 638
           +G R+YP RP P GY  S     +  L   AS  RY      Q  +  N F+++ D
Sbjct: 568 AGDRRYPARPDPMGYSPSEMGVPSSPLPRPASDPRYGSYPYGQSAQYGNYFNYNQD 623


>SB_21483| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-17)
          Length = 313

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 395 VTSVYVFSAVSVGIYDVQGCCFRYTFRYFSVRYP 294
           +++VY F  + +G+  V    F    R+++VRYP
Sbjct: 86  LSNVYTFQDIFLGLTSVTSLMFISAERFYAVRYP 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,893
Number of Sequences: 59808
Number of extensions: 345104
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)