Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060574.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061479-1|AAL29027.1|  546|Drosophila melanogaster LD44506p pro...    43   5e-04
AE014297-2927|AAF55847.2|  546|Drosophila melanogaster CG5745-PA...    43   5e-04
M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.         29   7.9  
M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein ( D.me...    29   7.9  

>AY061479-1|AAL29027.1|  546|Drosophila melanogaster LD44506p
           protein.
          Length = 546

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
 Frame = +3

Query: 168 ARCTGEALPKGH-PKRGYVRVVVSAIPGVSNDAWDLGDDE--IIS---------GIXD-T 308
           A   G A+ +G  P  G V         VS DAWD+GDDE  IIS         G  D  
Sbjct: 73  AAAVGVAVGRGAAPGSGMVSTFTEYQKSVS-DAWDMGDDEFCIISSTEAAAAAVGAGDAA 131

Query: 309 KISKSISETAALNVINSHRNSTKNVNRS 392
             S+ +S+T ALNVI +H  S +N N S
Sbjct: 132 HFSRQVSQTVALNVIETHSRSNQNHNAS 159


>AE014297-2927|AAF55847.2|  546|Drosophila melanogaster CG5745-PA
           protein.
          Length = 546

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
 Frame = +3

Query: 168 ARCTGEALPKGH-PKRGYVRVVVSAIPGVSNDAWDLGDDE--IIS---------GIXD-T 308
           A   G A+ +G  P  G V         VS DAWD+GDDE  IIS         G  D  
Sbjct: 73  AAAVGVAVGRGAAPGSGMVSTFTEYQKSVS-DAWDMGDDEFCIISSTEAAAAAVGAGDAA 131

Query: 309 KISKSISETAALNVINSHRNSTKNVNRS 392
             S+ +S+T ALNVI +H  S +N N S
Sbjct: 132 HFSRQVSQTVALNVIETHSRSNQNHNAS 159


>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
          Length = 2483

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 165  SARCTGEALPKGHPKRGYVRVVVSAIPGVSNDAWDLGDDEIISGIXDTKISKSISETA 338
            +A  T E  P    +RG V V  + +PG        GD ++ S      IS+  SE+A
Sbjct: 1480 AAPSTKECCPGNQRRRGGVVVGGTTVPGTGGVTGGGGDPQLSSSHSFANISRQTSESA 1537


>M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein (
            D.melanogaster pecanexgene, exons 1 (partial) and 2. ).
          Length = 1938

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 165  SARCTGEALPKGHPKRGYVRVVVSAIPGVSNDAWDLGDDEIISGIXDTKISKSISETA 338
            +A  T E  P    +RG V V  + +PG        GD ++ S      IS+  SE+A
Sbjct: 935  AAPSTKECCPGNQRRRGGVVVGGTTVPGTGGVTGGGGDPQLSSSHSFANISRQTSESA 992


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,528,844
Number of Sequences: 53049
Number of extensions: 489463
Number of successful extensions: 1258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)