Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060574.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.68 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.68 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 198 PLVR-PPRYSALRCPPE 151
           P++R PP +S  RCPPE
Sbjct: 467 PVLRSPPAFSHSRCPPE 483


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 198 PLVR-PPRYSALRCPPE 151
           P++R PP +S  RCPPE
Sbjct: 467 PVLRSPPAFSHSRCPPE 483


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 348 RSRLLFPIYFSIF 310
           RSR++FP+ F IF
Sbjct: 447 RSRIVFPVAFIIF 459


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 168 LRCPPERVRQQTLVMFGFVIFHNNVQFETFLTIF 67
           LR PP++V +  +V+F     +  V++++ + I+
Sbjct: 101 LRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 134


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 604 DELQTDSAGLGIPV 645
           DE++ DSA  GIPV
Sbjct: 47  DEMKKDSAVKGIPV 60


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 604 DELQTDSAGLGIPV 645
           DE++ DSA  GIPV
Sbjct: 47  DEMKKDSAVKGIPV 60


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 604 DELQTDSAGLGIPV 645
           DE++ DSA  GIPV
Sbjct: 47  DEMKKDSAVKGIPV 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,963
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)