Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060572.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 88  KCVCIKNLKFWPTCPTRCSNSSLDPTHRQLKNCATR 195
           KCV  K     PTC   C  ++ +   R  K+ A R
Sbjct: 872 KCVTCKCENGKPTCWRECDKATCEKLFRMKKSSALR 907


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 103 LYKRISVIKFAFVSSKLLRQMLGW 32
           LY+RI  +K A  S K L  + GW
Sbjct: 147 LYERIQKLKKANPSLKTLLAIGGW 170


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/45 (22%), Positives = 17/45 (37%)
 Frame = +3

Query: 522 NWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPMGVSAHDWXP 656
           +++N   + RH++  A      + S       G  MG     W P
Sbjct: 3   SYYNSTNMYRHQQAVAAPANAPMHSWYAGYHQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/45 (22%), Positives = 17/45 (37%)
 Frame = +3

Query: 522 NWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPMGVSAHDWXP 656
           +++N   + RH++  A      + S       G  MG     W P
Sbjct: 3   SYYNSTNMYRHQQAVAAPANAPMHSWYAGYHQGAQMGPEQQMWEP 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,358
Number of Sequences: 336
Number of extensions: 3631
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)