Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060572.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    28   1.1  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   5.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   5.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.7  

>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 310 FGQRRTFYKMDSSAKILDAGDTGRLLSNMGCRFSKSNC 197
           +  +R +   D+S K+LD+ +   L S +  R+ KS C
Sbjct: 260 YNLQRAYGYEDASGKVLDSAEWLNLYSQLAKRYPKSEC 297


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 157 PNCCLSNALDMLAKILNSL-YKRISVIK 77
           P+ C  NA+D+L K+L  +  KRIS I+
Sbjct: 275 PHNCTKNAMDLLHKMLTYVPSKRISAIE 302


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 653 SPIMGRHTHGYSGFXGLV 600
           +PI   H HG SGF G V
Sbjct: 72  APITATHVHGASGFEGAV 89


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 286 KMDSSAKILDAGDTGRLLSNMGCRFSKSNCTLLRSSSIVGVSGPNC 149
           ++D+ + +LD+ +    +   GC    SNCT++    +  VS  NC
Sbjct: 410 QVDNHSIVLDSVELNHSVQIFGC----SNCTIIIKGKLNTVSMSNC 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,976
Number of Sequences: 5004
Number of extensions: 57851
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)