Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060572.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.16 
SB_17368| Best HMM Match : Glyco_tran_28_C (HMM E-Value=1.3)           33   0.22 
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         32   0.38 
SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)                 32   0.38 
SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)                   30   1.5  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   6.1  
SB_24426| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)                28   8.1  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   8.1  
SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 453 HHIMEN*RRSSKKHNVARHVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPM 629
           H ++      S  ++V+ +V    W  Q  +L H K   FIT  G     EA   G+P+
Sbjct: 456 HKVLWKVDEGSYPNSVSDNVKLVEWMPQNDILGHNKTRLFITHAGAHGMAEAGYHGVPV 514


>SB_17368| Best HMM Match : Glyco_tran_28_C (HMM E-Value=1.3)
          Length = 157

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 489 KHNVARHVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPM 629
           K +V  +V    W  Q  VL H K   FIT  G     E+   G+PM
Sbjct: 64  KDSVPPNVRAVKWLPQNDVLGHSKTKLFITHAGANGLAESAYHGVPM 110


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 495 NVARHVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPM 629
           ++  +V T  W  Q  +L H K   FIT  G     E+   G+PM
Sbjct: 111 SIPSNVRTVKWLPQNDLLGHSKTKLFITHAGANGLAESAYHGVPM 155


>SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)
          Length = 385

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 495 NVARHVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPM 629
           ++  +V T  W  Q  +L H K   FIT  G     E+   G+PM
Sbjct: 201 SIPSNVRTVKWLPQNDLLGHSKTKLFITHAGANGLAESAYHGVPM 245


>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
          Length = 261

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 507 HVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPMGVS 638
           +V+   W  Q  +L +  +  FIT GG  S  E    G+P+ V+
Sbjct: 82  NVMLVKWMPQNDILANSNVKLFITHGGANSVYEGCGHGVPLLVT 125


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
 Frame = +1

Query: 121  PTCPTRCSNSSLDP---THRQLKNCATRCNCFC*TYIPYLTTTDPCRPRPVSWRRNPSC- 288
            P CP RC  + L P    H     C + C+  C    P    T  C    +     P C 
Sbjct: 1413 PDCPARCCITVLQPLNEKHNTTAECPSECSETCKPECPVKCCTGECPAGCLPSNCKPDCP 1472

Query: 289  KKCAV 303
             KC +
Sbjct: 1473 SKCCL 1477


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -2

Query: 336  IFASMTGLNLVNG----ALFTRWIPPPRYWTRATRVGCC 232
            +F S T  +L +G    +LFTR  PP   +TR  R+GCC
Sbjct: 1312 LFYSRTAKSLGDGHLWLSLFTR--PPHNPFTRCQRLGCC 1348


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 247  CRPRPVSWRRNPSCKKCAVDQIKSGHRRENEQVKKR 354
            C  R V WR+     +CA+DQ K      +EQ+++R
Sbjct: 3597 CNARSVGWRK----VRCAIDQGKFREYMRSEQIRQR 3628


>SB_24426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 361 YVSFGSSIDTKSFANEFFYMLINTFKALDN 450
           Y SFG  + T S AN  F   +NT+K L+N
Sbjct: 5   YSSFGGRL-TPSEANSAFQAQVNTYKCLEN 33


>SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 540 AVLRHKKMAAFITQ-GGLQSSDEAXEAGIPMGVSAHDWXPVLP 665
           A+ R  + AA +   G +  +DE   AG+   V AH W P+LP
Sbjct: 9   ALHRQARYAALVGNLGQVDLADEPPRAGLEPQV-AHSWQPLLP 50


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 84  TEMRLYKEFKILANMSNALLKQQFGPDTPTIEEL 185
           T+M  Y+E +I   +  A++KQQ G D   I E+
Sbjct: 783 TDMDTYQEQEITQELQRAMMKQQVGLDHDEILEI 816


>SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 495 NVARHVITQNWFNQRAVLRHKKMAAFITQGGLQSSDEAXEAGIPM 629
           +V+ +V    W  Q  +L H     FI  GG     E    G+P+
Sbjct: 355 SVSDNVKLVEWVPQNDILGHNNTKLFINHGGANGMAETAYHGVPV 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,448,019
Number of Sequences: 59808
Number of extensions: 455730
Number of successful extensions: 1124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)