Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060572.seq
(685 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 24 1.2
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 23 2.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 3.6
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 22 4.7
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 22 4.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.3
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 22 6.3
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 8.3
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 8.3
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 8.3
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 24.2 bits (50), Expect = 1.2
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 LINTFK-ALDNYTILWKIDDEVVKNITL 501
+++ +K A+D + LW +D ++ NI L
Sbjct: 125 IVSAYKIAIDKFDRLWVLDSGLINNIQL 152
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 23.0 bits (47), Expect = 2.7
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +1
Query: 160 PTHRQLKNCATRCNCFC*TYIPYLTTTDPCRPRPV---SWRRNPSCKKCAVDQIKSG 321
P++ C RC FC +P C P V + RN KK V + K G
Sbjct: 38 PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNK--KKVCVPRSKCG 92
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 22.6 bits (46), Expect = 3.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 674 LGAW*NWSPIMGRHTHGYSGFXGLVARL*SALRNKRRHF 558
L W N SP + T+ Y G+ G+++ A + HF
Sbjct: 658 LALWLNHSPNYDQVTNWYMGWKGMLSEKILAEPLVKEHF 696
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 439 ALDNYTILWKIDDEVVKN 492
A+D Y LW +D +V N
Sbjct: 133 AIDEYERLWVLDSGLVNN 150
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 22.2 bits (45), Expect = 4.7
Identities = 9/32 (28%), Positives = 12/32 (37%)
Frame = +1
Query: 160 PTHRQLKNCATRCNCFC*TYIPYLTTTDPCRP 255
P++ C RC FC +P C P
Sbjct: 38 PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAP 69
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 253 PRPVSWRRNPSCKK 294
P VSWR N SC K
Sbjct: 247 PIKVSWRGNYSCLK 260
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 253 PRPVSWRRNPSCKK 294
P VSWR N SC K
Sbjct: 298 PIKVSWRGNYSCLK 311
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 253 PRPVSWRRNPSCKK 294
P VSWR N SC K
Sbjct: 247 PIKVSWRGNYSCLK 260
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/25 (28%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 421 LINTFK-ALDNYTILWKIDDEVVKN 492
+++ +K A+D + LW +D ++ N
Sbjct: 125 IVSAYKIAIDKFDRLWILDSGIINN 149
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 67 VSSKLLRQMLGW*TGC 20
V S + +M+GW GC
Sbjct: 114 VISSFMERMIGWEIGC 129
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/26 (30%), Positives = 10/26 (38%)
Frame = +1
Query: 127 CPTRCSNSSLDPTHRQLKNCATRCNC 204
CP + P + C RCNC
Sbjct: 455 CPYTLKHKIRVPPGTPIYECNKRCNC 480
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 67 VSSKLLRQMLGW*TGC 20
V S + +M+GW GC
Sbjct: 114 VISSFMERMIGWEIGC 129
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,580
Number of Sequences: 438
Number of extensions: 3974
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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