Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060570.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 2e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 71 2e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 3e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 3e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 3e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 49 7e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 1e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 5e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 7e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 9e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 45 1e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 2e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 44 3e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 43 5e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 1e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 6e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 6e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 37 0.002
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.013
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.013
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.022
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.029
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 32 0.089
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.4
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 25 7.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +1
Query: 256 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGV 435
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 436 KTMGYKEPTPIQAQGWPIAMSGKN 507
K +G++ PTPIQ Q WP+AMSG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD 161
Score = 85.0 bits (201), Expect = 9e-18
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+++VG+ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QI Q FG
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.9 bits (166), Expect = 2e-13
Identities = 28/52 (53%), Positives = 43/52 (82%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
++++GV +TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVXVHNPIQYFEEANFPDYVQQGVK 438
+ F K+FY + SP EV+E R + + + + G+ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 439 TMGYKEPTPIQAQGWPIAMSGKN 507
++GY++PT IQAQ P SG++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRD 457
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.5 bits (155), Expect = 3e-12
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 3/55 (5%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQI 656
K+L+G+ +TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQI
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQI 341
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +1
Query: 337 RNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+ ++ +++ G + NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIPQV 665
K+LV +TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +1
Query: 364 GVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIPQVA 668
QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 48.8 bits (111), Expect = 7e-07
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIPQ 662
++++G+ QTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 30.3 bits (65), Expect = 0.27
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
K+LV TGSGKTLAY+LP + + G G AL++APTRELA QI
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQI 88
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXF 677
+++VG+ +TGSGKT A+++P I H+ + AL+L+P RELA Q +V F
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDF 162
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 45.6 bits (103), Expect = 7e-06
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
++++G +TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
+++VG+ +TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 382 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
PI F+E + +++G+K YKEPTPIQA WP ++G++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRD 204
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVA 668
K++VG TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+ +G +TGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAI--VHINNQPPIRRGDG 608
K+ G + + ++++G +TGSGKTLA+++P I ++ P R G G
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG 163
Query: 609 PIALVLAPTRELAQQIPQVA 668
++++PTRELA QI VA
Sbjct: 164 --VIIISPTRELALQIFGVA 181
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 617
G + S + ++ + +++G TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 618 LVLAPTRELAQQIPQ 662
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVA--AX 674
++L+ TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQAEKLS 139
Query: 675 FGT 683
FGT
Sbjct: 140 FGT 142
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+ ++G Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V G
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMG 208
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.1 bits (87), Expect = 6e-04
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 623
G +R A + ++++ Q+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 624 LAPTRELAQQIPQVAAXFG 680
LAPTRELAQQI +V G
Sbjct: 93 LAPTRELAQQIQKVVVALG 111
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 352 VTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
V VSG + P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 34.3 bits (75), Expect = 0.017
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 641
++L+ QTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 642 LAQQIPQVAAXF 677
L QI + + F
Sbjct: 267 LVCQIHEESRKF 278
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
+TG+GKTLA++L A + P +++L+PTRELA QI
Sbjct: 84 KTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 623
G +R + + ++++ + G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 624 LAPTRELAQQIPQVAAXFG 680
L PTRELA Q QV G
Sbjct: 118 LVPTRELALQTSQVCKTLG 136
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + G+ G++ P+PIQ + PIA+SG++ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 507 LVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
L+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 507 LVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
L+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 656
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 33.5 bits (73), Expect = 0.029
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 623
G + A S + ++++ Q+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 624 LAPTRELAQQIPQVAAXFG 680
L+PTRELA QI V G
Sbjct: 95 LSPTRELAVQIQNVVLALG 113
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 328 EEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 477
+E N E+T S N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTSEDV--NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.9 bits (69), Expect = 0.089
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
D+G + + S + +++ ++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 618 -LVLAPTRELAQQIPQVAAXF 677
LVL TRELA QI A F
Sbjct: 122 VLVLCHTRELAFQIKNEYARF 142
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Frame = +2
Query: 527 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRXWD 682
GF + G + HC H++ AY E F Y R++T + C R WD
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLWD 90
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 650
K++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Frame = +1
Query: 223 SEHASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVXVHNP 384
++ A R+G +Q F + F+D P + + + NH+ V+ V P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 385 IQYFEEANFPDYVQQGVKT 441
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 445 PLSLHLVAHNQENL--LLQSIE 386
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,892
Number of Sequences: 5004
Number of extensions: 50686
Number of successful extensions: 187
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -