Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060570.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 64 8e-11
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 64 1e-10
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 63 2e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 57 2e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 50 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 47 1e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 47 1e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 44 2e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 5e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 42 6e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 40 0.002
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 37 0.017
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 37 0.017
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 37 0.017
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 36 0.031
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 35 0.053
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 33 0.28
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 31 0.66
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.0
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 29 3.5
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 4.6
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.1
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
++++G+ +TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKT 441
+PFNKNFY+ HP + K+S E+++ R + VSG P F F + + ++
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534
Query: 442 MGYKEPTPIQAQGWPIAMSGKN*LAXFK----RVPAKRWP 549
+ Y +PT IQ Q PIA+SG++ + K + A WP
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWP 574
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 64.5 bits (150), Expect = 8e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3
Query: 549 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+ +VA G
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVG 156
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +1
Query: 310 RSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 477
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIPQVA 668
++++GV +TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI +
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEI 198
Query: 669 AXFG 680
FG
Sbjct: 199 LKFG 202
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +1
Query: 334 YRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRD 140
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
++++G+ +TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +1
Query: 268 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMG 447
F ++YD + V + S V+E R + + + G PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 448 YKEPTPIQAQGWPIAMSGKN*LAXFKRVPAKRWPTSCQPLC 570
++ PTPIQ Q MSG++ + + K S PLC
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLC 131
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVXVHNPIQYFEEANFPDYVQQGVK 438
QPF K+FY P + K +P E +E+R + E + V G P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 439 TMGYKEPTPIQAQGWPIAMSGKN*LA 516
Y++PTPIQAQ P+ MSG++ +A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 537 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXF 677
K +Y P + P I G IA+V+ PTRELA QI + F
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKF 167
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/91 (29%), Positives = 47/91 (51%)
Frame = +1
Query: 283 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 462
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 463 PIQAQGWPIAMSGKN*LAXFKRVPAKRWPTS 555
PIQ Q P+ +SG++ + K P+S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 623
G +R + L ++L+ QTGSGKT AY+LP + + Q P+AL
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALC 557
Query: 624 LAPTRELAQQI 656
+APTRELA+QI
Sbjct: 558 VAPTRELAKQI 568
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 358 VSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
VSG I F E F + + + GY+ PTP+Q PI M+G++ +A
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMA 521
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 611
+D G+ +S Y ++++G +TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 612 IALVLAPTRELAQQI 656
LV+APTRELA+Q+
Sbjct: 149 KVLVMAPTRELAKQV 163
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 322 EVEEYRNNHEVTVSGVXVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 489
++ +R+ + V G V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 490 AMSG 501
G
Sbjct: 197 MAHG 200
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 549 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 656
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
++++G +TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIG 146
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 385 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFK 525
++ F + G+ G+ PT IQ QG P+A+SG++ L K
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAK 95
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 614
KD G +A ++L+G +TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 615 ALVLAPTRELAQQIPQVA 668
++++PTREL+ Q VA
Sbjct: 647 VIIISPTRELSLQTYGVA 664
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIPQVAAXF 677
++++ Q+G+GKT + + + I+ + G D ALVLAPTRELAQQI +V
Sbjct: 123 RDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLAL 182
Query: 678 G 680
G
Sbjct: 183 G 183
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
K+++G+ +TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
Query: 681 T 683
+
Sbjct: 57 S 57
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIPQVA 668
++++ QTGSGKT A++LP + + N P A+ +APTRELA QI A
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEA 808
Query: 669 AXF 677
F
Sbjct: 809 RKF 811
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 349 EVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++ +A
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMA 753
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVW-KELVGVXQTGSGKTLAYILPAIVHIN-------NQPPI 593
D G + S + + ++ ++++G +TGSGKTLA+ +P I HI Q P
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206
Query: 594 -------RRGDGPIALVLAPTRELAQQI 656
+G +AL++APTRELA Q+
Sbjct: 207 DKESDLESQGYPLLALIMAPTRELALQV 234
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 349 EVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++ +A
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMA 176
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
++ +G +TGSGKT A+ LP + + + P G A+VL PTRELA QI
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELAFQI 91
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 623
G ++ A + ++++ Q+G+GKT + + + I+ Q +R P ALV
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALV 70
Query: 624 LAPTRELAQQIPQVAAXFG 680
L+PTRELA QI +V G
Sbjct: 71 LSPTRELANQIQKVVLALG 89
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIPQVA 668
QTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A
Sbjct: 423 QTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTA 475
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
K++V + +TGSGKT A+++P + G AL+L+PTRELA Q + G
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRELALQTQKFIKELG 375
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +3
Query: 429 RCKDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDG 608
+ K G+ + L + K L+ +TG+GK+L ++LP++ Q P RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227
Query: 609 PIALVLAPTRELAQQI 656
I ++ PTRELA Q+
Sbjct: 228 TI--IVVPTRELASQM 241
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G + + + ++++ + G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 618 LVLAPTRELAQQIPQVAAXFG 680
LVL PTRELA Q Q+ G
Sbjct: 119 LVLVPTRELALQTSQICIELG 139
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + G+ G+ +P+PIQ + P+A++G++ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G + + + ++++ + G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 618 LVLAPTRELAQQIPQVAAXFG 680
LVL PTRELA Q Q+ G
Sbjct: 119 LVLVPTRELALQTSQICIELG 139
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + G+ G+ +P+PIQ + P+A++G++ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 480 LADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIP 659
LAD V ++ Q+G+GKT A++L + ++ P P + L+PT ELA+Q
Sbjct: 138 LADPPV--NMIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTG 190
Query: 660 QVAAXFG 680
+VA G
Sbjct: 191 KVAEAMG 197
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 346 HEVTVSGVXVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 498
HEV V +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 471 SSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 650
+S + + + K++ TG+GKT A++LP + + +P + LV+ PTRELA
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAI 95
Query: 651 Q 653
Q
Sbjct: 96 Q 96
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 427 QGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+ V +G+ PTPIQA P+A+ GK+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKD 49
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 626
+++ GV GSGK LAY+LP I I + +GP+ L+L
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 609 PIALVLAPTRELAQQIPQVAAXFG 680
P ALVL+PTRELA QI +V G
Sbjct: 4 PQALVLSPTRELANQIQKVVLALG 27
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 385 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
I FE+ + + + V GYK+PTP+Q PI ++ +A
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMA 917
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPP 590
++L+ QTGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 373 VHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 483
+H P++ + FP Y + Y P P QA W
Sbjct: 7 IHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 280 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVXVHNPIQYFEEANFPDY 420
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 504 ELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+L+ ++G+GKT + + A+ ++ I + ++L PTRE+A Q+ V G
Sbjct: 52 DLIAQAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAIG 105
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 224 QNMRRPDWDSVHSNLSTKTFMIHILQFSKD 313
+N RR WDS HSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 230 CSDLQRILFSHQILQILQIYCHRC-QIETN 144
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 161 CQIETNYRRICCLLQIWN-HRFHGYYSS 81
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,943
Number of Sequences: 59808
Number of extensions: 381258
Number of successful extensions: 1011
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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