Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060570.seq
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 100 2e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 91 5e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 91 5e-19
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 78 6e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 78 6e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 3e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 64 6e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 2e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 60 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 56 3e-08
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 54 7e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 50 1e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 2e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 50 2e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 49 3e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 49 3e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 49 3e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 48 4e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 47 1e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 1e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 47 1e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 46 2e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 3e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 45 4e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 45 4e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 5e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 7e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 9e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 43 2e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 43 2e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 42 3e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 3e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 4e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 5e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 41 7e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 38 0.006
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 38 0.006
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 38 0.006
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.011
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 37 0.011
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 36 0.025
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 34 0.10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 33 0.13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 33 0.13
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 33 0.23
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 33 0.23
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.23
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.23
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.23
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.23
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.31
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.54
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 1.6
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.0
At2g33420.1 68415.m04096 expressed protein 28 5.0
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 6.6
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.6
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 27 8.8
At2g25460.1 68415.m03049 expressed protein 27 8.8
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.8
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.8
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 SPR-LGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANF 411
SPR L L PF KNFY P V + EVEEYR E+TV G + P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 412 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
PDYV + VK G+ EPTPIQ+QGWP+AM G++
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRD 138
Score = 91.1 bits (216), Expect = 6e-19
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
++L+G+ +TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QI Q A+ FG
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 681 T 683
+
Sbjct: 197 S 197
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/90 (42%), Positives = 58/90 (64%)
Frame = +1
Query: 238 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPD 417
P+ F +L F KNFY PTV + +V YR +++V G V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 418 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
++L+G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QI + + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/90 (42%), Positives = 58/90 (64%)
Frame = +1
Query: 238 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPD 417
P+ F +L F KNFY PTV + +V YR +++V G V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 418 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
++L+G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QI + + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.8 bits (183), Expect = 6e-15
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
++ +GV +TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKT 441
+PF KNFY + + + V YR E+ V G V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 442 MGYKEPTPIQAQGWPIAMSGKN 507
+ Y++P PIQAQ PI MSG++
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRD 435
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 77.8 bits (183), Expect = 6e-15
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
++ +GV +TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/82 (34%), Positives = 44/82 (53%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKT 441
+PF KNFY + + + EV YR E+ V G V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 442 MGYKEPTPIQAQGWPIAMSGKN 507
+ Y++P PIQ Q PI MSG++
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRD 568
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.1 bits (169), Expect = 3e-13
Identities = 29/52 (55%), Positives = 43/52 (82%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
++++G+ +TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/82 (34%), Positives = 46/82 (56%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKT 441
+P NK+FY+ ++ + E +YR + VSG VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 442 MGYKEPTPIQAQGWPIAMSGKN 507
Y++PT IQ Q PI +SG++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRD 267
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 289 PHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 468
P P+ S E Y HE+TVSG V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 469 QAQGWPIAMSGKN*LAXFK 525
QAQ WPIAM G++ +A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+++V + +TGSGKTL Y++P +H+ R GP LVL+PTRELA QI + A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 289 PHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 468
P P+ S E Y HE+TVSG V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 469 QAQGWPIAMSGKN*LAXFK 525
QAQ WPIAM G++ +A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+++V + +TGSGKTL Y++P +H+ R GP LVL+PTRELA QI + A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 289 PHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 468
P P+ S E Y HE+TVSG V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 469 QAQGWPIAMSGKN*LAXFK 525
QAQ WPIAM G++ +A K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+++V + +TGSGKTL Y++P +H+ R GP LVL+PTRELA QI + A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKFG 254
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIPQVAA 671
++++G+ +TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI +
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 672 XF 677
F
Sbjct: 411 KF 412
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +1
Query: 334 YRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRD 352
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +1
Query: 271 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVK 438
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 439 TMGYKEPTPIQAQGWPIAMSGKN*LAXFK 525
+ G+ PTPIQAQ WPIA+ ++ +A K
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+++V + +TGSGKTL Y++PA + + + R +GP L+LAPTRELA QI A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQP---PIRRGD 605
KD G+ L ++++G+ TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 606 GPIALVLAPTRELAQQIPQVAAXF 677
GPIALV+ P+RELA+Q V F
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQF 196
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = +1
Query: 247 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQ 426
G +P + ++ P V K S +++ R +TV+G + PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 427 QGVKTMGYKEPTPIQAQGWPIAMSGKN 507
+ +K G PTPIQ QG P+ +SG++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRD 136
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQP---PIRRGD 605
K+ G+ + L ++++G+ TGSGKTL ++LP I+ + PI G+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 606 GPIALVLAPTRELAQQIPQVAAXF 677
GPI L++ P+RELA+Q +V F
Sbjct: 222 GPIGLIVCPSRELARQTYEVVEQF 245
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +1
Query: 283 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 462
+ P + K S + + R + V+G + PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 463 PIQAQGWPIAMSGKN 507
PIQ QG P+ ++G++
Sbjct: 171 PIQVQGLPVILAGRD 185
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
+++V + +TGSGKTL Y++P +H+ R GP LVL+PTRELA QI A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELATQIQVEALKFG 325
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 433 VKTMGYKEPTPIQAQGWPIAMSGKN*LAXFK 525
V + G+ P+PIQAQ WPIAM ++ +A K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 328 EEYRNNHEVTVSGVXVHNPIQYFEEANFPD 417
E Y HE+TVSG V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIPQVA 668
++L+G+ +TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 669 AXFG 680
G
Sbjct: 212 REAG 215
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 385 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
++ F E+N P+ V KT +++P+PIQ+ WP + G++
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRD 153
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIAL 620
G+++ + L + ++++G +TG+GKTLA+ +P I I RG P+ L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 621 VLAPTRELAQQI 656
VLAPTRELA+Q+
Sbjct: 183 VLAPTRELARQV 194
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +3
Query: 429 RCKDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRR--- 599
+ K NG++ +S +LVG +TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 600 --GDGPIALVLAPTRELAQQI 656
G P LVL PTRELA+Q+
Sbjct: 170 GYGRSPSVLVLLPTRELAKQV 190
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 611
K G+++ + L + ++++G +TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 612 IALVLAPTRELAQQI 656
LVLAPTRELA+Q+
Sbjct: 192 QCLVLAPTRELARQV 206
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 611
KD G + + L K+++ +TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 612 --IALVLAPTRELAQQ 653
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +3
Query: 432 CKDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
CK+ G+++ + + ++++G+ QTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 612 IALVLAPTRELAQQIPQVAAXFGT 683
ALV+ PTRELA Q+ + G+
Sbjct: 128 FALVVTPTRELAFQLAEQFKALGS 151
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
FE ++ + K +G ++PTP+Q P ++G++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRD 97
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQI 656
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQV 120
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 442 MGYKEPTPIQAQGWPIAMSGKN 507
MG++ PT +QAQ P+ +SG++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRD 69
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIPQV 665
++L+ QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 666 AAXF 677
A F
Sbjct: 257 AKKF 260
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +1
Query: 259 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGV 435
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 436 KTMGYKEPTPIQAQGWPIAMSGKN*LA 516
+ Y +PTP+Q PI + G++ +A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIPQV 665
++L+ QTGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 666 AAXF 677
A F
Sbjct: 244 ARKF 247
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 265 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKT 441
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 442 MGYKEPTPIQAQGWPIAMSGKN*LA 516
Y +PTP+Q PI +G++ +A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 611
K+ G Q + + K+++G +TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 612 IALVLAPTRELAQQIPQVA 668
+V+ PTRELA Q VA
Sbjct: 164 -VIVICPTRELAIQTKNVA 181
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 444 GLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAL 620
G+++ S + K++V +TGSGKTLAY+LP + + + + ++ P A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 621 VLAPTRELAQQI 656
+L P+REL QQ+
Sbjct: 125 ILVPSRELCQQV 136
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +1
Query: 322 EVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 501
EVEE RN+ E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 502 KN*LAXFK 525
K+ +A K
Sbjct: 84 KDVVARAK 91
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGD--G 608
KD G + + L K+++ +TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 609 PI-ALVLAPTRELAQQ 653
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIPQV 665
++L+ QTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 666 AAXF 677
A F
Sbjct: 249 AKKF 252
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 352 VTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
V SG V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIPQV 665
++L+ QTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 666 AAXF 677
A F
Sbjct: 249 AKKF 252
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 352 VTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
V SG V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 614
K+ G R + + + ++++G +TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 615 ALVLAPTRELAQQIPQVA 668
LV+ PTRELA Q VA
Sbjct: 229 VLVICPTRELAIQSYGVA 246
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +1
Query: 262 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVXVHNPIQYFEEANFPDYVQQGVKT 441
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 442 MGYKEPTPIQAQGWPIAMSGKN 507
MG+ T IQA+ P M G++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGED 193
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIPQVAA 671
K L+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 672 XFG 680
G
Sbjct: 208 MLG 210
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 313 SPYEVEEYRNNHEVTVSGVX--VHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 486
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 487 IAMSGKN*LA 516
A++GK+ LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIPQVAA 671
K L+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 672 XFG 680
G
Sbjct: 71 MLG 73
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 44.8 bits (101), Expect = 5e-05
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIPQVAA 671
K++V TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAE 111
Query: 672 XF 677
F
Sbjct: 112 PF 113
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 653
K+++ +TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/66 (33%), Positives = 42/66 (63%)
Frame = +3
Query: 456 TDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 635
TD S++ + + ++++G +TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 636 RELAQQ 653
RELA Q
Sbjct: 153 RELAAQ 158
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 337 RNNHEVTVSGVXVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 504
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 505 N*LAXFKRVPAKRWPTSCQPL 567
A K + C L
Sbjct: 180 ECFACAPTGSGKTFAFICPML 200
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
+E TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIPQVA 668
K++V TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Frame = +3
Query: 432 CKDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHI-----NNQPPIR 596
C+ G + + L + K+++G+ QTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 597 RGDGP--IALVLAPTRELAQQIPQ 662
R P A VL+PTRELA QI +
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAE 107
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 385 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
++ F E + + + + +G+K P+ IQA+ P A+ GK+
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKD 48
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQQIPQV 665
K +V TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +V
Sbjct: 150 KSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRV 208
Query: 666 A 668
A
Sbjct: 209 A 209
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/50 (42%), Positives = 35/50 (70%)
Frame = +3
Query: 504 ELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
++V + +TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQ 113
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 501
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +3
Query: 441 NGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 608
+G+ + + L++ K+ + +TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 609 PIALVLAPTRELAQQI 656
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 355 TVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 432 CKDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
C+ G ++ ++ + + ++L TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 612 IALVLAPTRELAQQI 656
L+L PTRELA QI
Sbjct: 240 RVLILTPTRELAVQI 254
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQI 656
++++ +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +3
Query: 441 NGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 608
+G+ + + L++ K+ + +TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 609 PIALVLAPTRELAQQI 656
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 656
K + Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +3
Query: 498 WKELVGVXQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIPQVA 668
+K++ TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 669 AXF 677
F
Sbjct: 111 QPF 113
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQV 665
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q+ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G +R + + ++++ + G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 618 LVLAPTRELAQQIPQVAAXFG 680
+++ PTRELA Q QV G
Sbjct: 203 VIIVPTRELALQTSQVCKELG 223
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G +R + + ++++ + G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 618 LVLAPTRELAQQIPQVAAXFG 680
+++ PTRELA Q QV G
Sbjct: 203 VIIVPTRELALQTSQVCKELG 223
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVA 668
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 501 KELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIPQVAAXFG 680
K L+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Frame = +3
Query: 489 SYVWKELVGVXQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 623
+Y K+++G +TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 624 LAPTRELAQQIPQ 662
+ PTRELA Q+ +
Sbjct: 285 ITPTRELALQVTE 297
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G ++ + + +++ + G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 618 LVLAPTRELAQQIPQV 665
++L PTRELA Q QV
Sbjct: 226 VILVPTRELALQTSQV 241
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G ++ + + +++ + G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 618 LVLAPTRELAQQIPQV 665
++L PTRELA Q QV
Sbjct: 196 MILVPTRELALQTSQV 211
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G ++ + + +++ + G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 618 LVLAPTRELAQQIPQV 665
++L PTRELA Q QV
Sbjct: 196 MILVPTRELALQTSQV 211
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAXFKRVPAK 540
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 614
D+G + + + + +++ ++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 615 ALVLAPTRELAQQIPQVAAXFGT 683
ALVL TRELA QI F T
Sbjct: 117 ALVLCHTRELAYQICNEFVRFST 139
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 438 DNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 614
D+G + + + + +++ ++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 615 ALVLAPTRELAQQIPQVAAXFGT 683
ALVL TRELA QI F T
Sbjct: 117 ALVLCHTRELAYQICNEFVRFST 139
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 615 ALVLAPTRELAQQIPQVAAXFG 680
ALVLAPTRELAQQI +V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 615 ALVLAPTRELAQQIPQVAAXFG 680
ALVLAPTRELAQQI +V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 615 ALVLAPTRELAQQIPQVAAXFG 680
ALVLAPTRELAQQI +V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 656
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 394 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 501
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 382 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 516
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.5 bits (68), Expect = 0.54
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +3
Query: 435 KDNGLQRTDAYSSSRLADSYVWKELVGVXQTGSGKTLAYILPAIVHINN----QPPIRRG 602
+D+G R + + K+++ +TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 603 DGP-----IALVLAPTRELAQQI 656
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIPQVAAXFGT 683
++G GKT ++L + I P G + ALVL TRELA QI F T
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRFST 56
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 655 ICCANSLVGAKTKAIGPSPLRI 590
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 16 SKRIHSLNKHLQLNPKI 66
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 420 CATRCKDNGLQRTDAYSSSRLADSYVWKELVGVXQ 524
C T + GL+ + Y ++RLA S V KEL+ + +
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRE 1000
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 16 SKRIHSLNKHLQLNPKI 66
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 521 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 664
++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 66 ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 152 ETNYRRICCLLQIWNHRFHGYY 87
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 283 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEP 459
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 460 TPIQAQGWPIAMS 498
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 283 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEP 459
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 460 TPIQAQGWPIAMS 498
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 283 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVXVHNPIQYFEEANFPDYVQQGVKTMGYKEP 459
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 460 TPIQAQGWPIAMS 498
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,821
Number of Sequences: 28952
Number of extensions: 266183
Number of successful extensions: 871
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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