Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060568.seq
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    40   2e-04
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   2.2  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 287 IICPNVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRYE 466
           I CP  ++G+  L  PR NK  AFT EER    I   L    ++ ++Q+D C        
Sbjct: 9   IECP--LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRCYDQYKAIG 66

Query: 467 DN-LNKYLYLVEL 502
           D  L K LYL +L
Sbjct: 67  DEPLQKNLYLSQL 79



 Score = 33.5 bits (73), Expect = 0.025
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
           + LF+ L+++++ + +PI+Y P  G A ++F  IYR
Sbjct: 84  QTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYR 119


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 446 ISVDRYEDNLNKYLYLVELQDEXRNCSLD 532
           IS+D  ++N NK  +  E++DE R   LD
Sbjct: 298 ISIDPKDNNSNKQDHFAEIEDELRQQFLD 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,060
Number of Sequences: 5004
Number of extensions: 42763
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)