Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060568.seq
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 55 4e-08
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 55 4e-08
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 54 1e-07
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 54 1e-07
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 52 5e-07
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 43 2e-04
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 43 2e-04
01_01_0986 + 7791032-7791124,7791484-7791633,7791782-7791874,779... 31 0.74
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000 29 3.9
06_03_0543 + 21967787-21970261 27 9.1
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 27 9.1
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +1
Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
E+LF++LL +NVE+ LP+VY P VG ACQ++G IYR
Sbjct: 99 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYR 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/70 (40%), Positives = 39/70 (55%)
Frame = +2
Query: 299 NVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRYEDNLN 478
+V G LRDPR NKGLAF+ ER A + GLL SQE Q ++ Y L
Sbjct: 27 SVASGYTLLRDPRHNKGLAFSEAERDAHYLRGLLPPSIVSQELQEKKLMHNLRNYTVPLQ 86
Query: 479 KYLYLVELQD 508
+Y+ +++LQ+
Sbjct: 87 RYIAMMDLQE 96
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +1
Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
E+LF++LL +NVE+ LP+VY P VG ACQ++G IYR
Sbjct: 8 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYR 43
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +1
Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
E+LF++LL +NVE+ LP+VY P VG ACQ++G I+R
Sbjct: 102 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR 137
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +2
Query: 251 DKCRDYHEVTGNIICPNVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQ 430
D+ + +T +C V G LRDPR NKGL+FT +ER A + GLL SQE Q
Sbjct: 16 DRATEDQPITPWAVC--VASGHSLLRDPRHNKGLSFTEKERDAHYLRGLLPPVVLSQELQ 73
Query: 431 LDICRISVDRYEDNLNKYLYLVELQD 508
+V +++ L +Y+ L++LQ+
Sbjct: 74 EKRLLQNVRQFQVPLQRYMALMDLQE 99
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +1
Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
E+LF++LL +NVE+ LP+VY P VG ACQ++G I+R
Sbjct: 168 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR 203
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 299 NVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRYEDNLN 478
+V G LRDP NKGLAF+ +ER A + GLL SQ+ Q+ ++ +Y L
Sbjct: 96 SVASGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPAVVSQDLQVKKIMHNLRQYSVPLQ 155
Query: 479 KYLYLVELQD 508
+Y+ +++LQ+
Sbjct: 156 RYMAMMDLQE 165
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +1
Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIY 618
E+LF++LL +NVE+ LP+VY P VG ACQ++G I+
Sbjct: 122 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF 156
Score = 50.8 bits (116), Expect = 9e-07
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = +2
Query: 299 NVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRYEDNLN 478
+V G + LRDPR NKGLAF ER + GLL SQE Q ++ +Y+ L
Sbjct: 50 SVASGYNLLRDPRYNKGLAFNERERETHYLRGLLPPAIVSQELQERKIMHNIRQYQLPLQ 109
Query: 479 KYLYLVELQD 508
KY+ +++LQ+
Sbjct: 110 KYMAMMDLQE 119
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 43.2 bits (97), Expect = 2e-04
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +1
Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
E L++R+L +N++ + PI+Y P VGL C+ + ++R
Sbjct: 124 ETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFR 159
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/43 (48%), Positives = 25/43 (58%)
Frame = +2
Query: 308 RGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLD 436
RG D L DP NK AF + ER LG+ GLL + S E+Q D
Sbjct: 45 RGTDILHDPWFNKDTAFPMTERDRLGLRGLLPPRVMSFEQQYD 87
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 308 RGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLD 436
RG D L DP N+G F++ ER LG+ GLL S ++Q+D
Sbjct: 44 RGSDILHDPWFNRGTGFSMTERDRLGLRGLLPPNVVSSQQQID 86
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +1
Query: 514 EKLFFR--LLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
E ++++ +L +N+E++ PIVY P VGL CQ + ++R
Sbjct: 159 ETMYYKAEVLIDNIEEHAPIVYTPTVGLVCQNYSGLFR 196
>01_01_0986 +
7791032-7791124,7791484-7791633,7791782-7791874,
7792440-7792474,7792544-7793009,7793085-7793312,
7793387-7793446
Length = 374
Score = 31.1 bits (67), Expect = 0.74
Identities = 27/96 (28%), Positives = 44/96 (45%)
Frame = +2
Query: 275 VTGNIICPNVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISV 454
+T IC N ++ + LR P N +A L+ +L + L +FK+ +I
Sbjct: 268 ITSLSICSNTLQVVSFLRHPGANLDMAI-LDNFQSLTMLELTMLEFKAVGLG-NIFVFLK 325
Query: 455 DRYEDNLNKYLYLVELQDEXRNCSLDFWPRTSRSIY 562
+ NL K+L V+ NC L F R+ R+I+
Sbjct: 326 SCHRPNLKKFLVTVDTSKPTLNCILIF-QRSDRTIH 360
>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
Length = 461
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 305 VRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKF 412
+R +HLR P L KG EER L +HGLL K+
Sbjct: 69 LRWANHLR-PDLRKGPFSPDEERLILRLHGLLGNKW 103
>06_03_0543 + 21967787-21970261
Length = 824
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 488 YLVELQDEXRNCSLDFWPRTSRSIY 562
YL+ L D+ +N S +WP S +I+
Sbjct: 182 YLLSLFDDEKNISFIYWPNPSMTIW 206
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 309 RTTFGQMILPVTSW*SRHLSRKVRGSSSLLGCTP 208
R + G+++LP W + RKV+ L+G +P
Sbjct: 247 RASEGEVVLPKLHWIPKEAKRKVKCDQPLIGGSP 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,715
Number of Sequences: 37544
Number of extensions: 285575
Number of successful extensions: 621
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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