Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060568.seq
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_49756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 39/77 (50%), Positives = 47/77 (61%)
 Frame = +2

Query: 305 VRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRYEDNLNKY 484
           +RG D +RD  LNKGLAFTLEER  LGIHGLL     SQE Q       + R  ++L KY
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDLEKY 119

Query: 485 LYLVELQDEXRNCSLDF 535
           + L+ L +  RN SL F
Sbjct: 120 IQLMALLE--RNESLFF 134



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 20/36 (55%), Positives = 29/36 (80%)
 Frame = +1

Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
           E LFFR+L +  E+ +PIVY P VGLAC+++G+I+R
Sbjct: 130 ESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFR 165


>SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +2

Query: 284 NIICPNVVRGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRY 463
           NI+    +RG+ +++ PR  K     + E    G+   +  K  S+ E+ +   I+V  Y
Sbjct: 142 NIVKYQPMRGLSYIQLPRFKKSDKALVNELDYSGVEFPVTTKHYSRIEKQNSININVFSY 201

Query: 464 EDNLNKYLYL 493
           +D     +Y+
Sbjct: 202 DDKQPYPIYV 211


>SB_49756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 189 IXPNRALAYILTKNSILEPSSINVGITTK*PAISFARMLSEAS 317
           I PN ALA IL+   +LE      G + K P  S+    +E++
Sbjct: 40  INPNMALAQILSPTDVLEYVDTKFGRSPKGPYASYQLTFTESN 82


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 218 PNKELDPRTFLDKCRDYHEVTGNIICPNVVRGIDHLRDPRLNKGLAF 358
           P++ + P+T+ +    ++E  GN +C   +  + H  DP+  K LAF
Sbjct: 60  PSQHVPPKTWNEFASSWNEHYGNNLCVLAMHSVLHEWDPKGRK-LAF 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,941
Number of Sequences: 59808
Number of extensions: 333920
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)