Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060568.seq
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    66   1e-11
AC024811-3|AAF60778.1|  209|Caenorhabditis elegans Hypothetical ...    28   4.7  
U23174-2|AAM97992.1|  100|Caenorhabditis elegans Inhibitor of se...    27   8.2  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    27   8.2  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    27   8.2  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = +2

Query: 308 RGIDHLRDPRLNKGLAFTLEERXALGIHGLLAAKFKSQEEQLDICRISVDRYEDNLNKYL 487
           RGID L+ P LNKG+AF+L ER  LG+HGLL   F ++E+Q       + +  DNL KY+
Sbjct: 50  RGIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYI 109

Query: 488 YLVELQD 508
            L  LQD
Sbjct: 110 QLDSLQD 116



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +1

Query: 514 EKLFFRLLAENVEKYLPIVYXPNVGLACQRFGLIYR 621
           EKL++R+L +NV++ +PIVY P VG ACQ FG IYR
Sbjct: 119 EKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYR 154


>AC024811-3|AAF60778.1|  209|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.3 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 388 NAESXTFF*SKRETFIKARISKVVDASDNIRANDIAGYFVVIPTFIEEGSRI 233
           N+     F  K   F K+  SK+V++   ++ N +  +F+ I TF++E   I
Sbjct: 29  NSIHLLIFPQKIAKFSKSLYSKIVESGFQVQKNFVNLFFLFILTFLQENRLI 80


>U23174-2|AAM97992.1|  100|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 1 protein.
          Length = 100

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 470 CPRICPLISCKCPA 429
           CPRIC    C+CPA
Sbjct: 65  CPRICQPARCQCPA 78


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = -1

Query: 439 NVQLFFLTFEFGRQKTVNAESXTFF*SKRETFIKARISKVVDASDNIRANDIAGYFVVIP 260
           NV + F  ++ G  +     S  FF + +     A    + + +   R     G +VV+P
Sbjct: 678 NVPIGFAVYDAGNNR--GRLSKQFFAANKSAMRSAAFINLREMTGRFRVPP--GNYVVVP 733

Query: 259 TFIEEGSRIEFFVRMY 212
           +  E     EF +R+Y
Sbjct: 734 STFEPNEEAEFMLRVY 749


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = -1

Query: 439 NVQLFFLTFEFGRQKTVNAESXTFF*SKRETFIKARISKVVDASDNIRANDIAGYFVVIP 260
           NV + F  ++ G  +     S  FF + +     A    + + +   R     G +VV+P
Sbjct: 699 NVPIGFAVYDAGNNR--GRLSKQFFAANKSAMRSAAFINLREMTGRFRVPP--GNYVVVP 754

Query: 259 TFIEEGSRIEFFVRMY 212
           +  E     EF +R+Y
Sbjct: 755 STFEPNEEAEFMLRVY 770


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,838
Number of Sequences: 27780
Number of extensions: 248855
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)