Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060564.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.14 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  KTQQWVTSKTHTSRPETPGPQPPS 149
           +T  W++S +    P TP P PPS
Sbjct: 102 RTDDWLSSPSGNVPPLTPSPGPPS 125


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 457 PEXTIRNFEVPHAGHRCQPSGSGSHHPRYQ 368
           P  T ++    H GH  Q      H P +Q
Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQ 184


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 457 PEXTIRNFEVPHAGHRCQPSGSGSHHPRYQ 368
           P  T ++    H GH  Q      H P +Q
Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQ 186


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 138 EAPESPVSKCVSSMSPIVV 82
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 120  PETPGPQPPSPCNVRPCVKTVSLC*RVVH 206
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 111 TSRPETPGPQPPSPC 155
           TSRP+   PQP   C
Sbjct: 93  TSRPKLQEPQPSQHC 107


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPS 149
           S +HT    TP  +PPS
Sbjct: 60  STSHTDGASTPDVRPPS 76


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPS 149
           S +HT    TP  +PPS
Sbjct: 216 STSHTDGASTPDVRPPS 232


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 96  TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC 191
           T+ T +S       Q P P +VRP    V  C
Sbjct: 206 TASTASSASNYSPSQSPEPESVRPLSLVVRRC 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,370
Number of Sequences: 336
Number of extensions: 3296
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)